{
    "type": "genome",
    "identifier": "GCF_017164735.1",
    "organism": "Actinacidiphila bryophytorum",
    "title": "Actinacidiphila bryophytorum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "KASETSART UNIVERSITY",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017164735.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN16632616",
        "wgs_master": "JADKYA000000000.1",
        "refseq_category": "na",
        "taxid": "1436133",
        "species_taxid": "1436133",
        "organism_name": "Actinacidiphila bryophytorum",
        "infraspecific_name": "strain=DSM 42138",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/04",
        "asm_name": "ASM1716473v1",
        "asm_submitter": "KASETSART UNIVERSITY",
        "gbrs_paired_asm": "GCA_017164735.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/164/735/GCF_017164735.1_ASM1716473v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7715897",
        "genome_size_ungapped": "7715897",
        "gc_percent": "72.500000",
        "replicon_count": "0",
        "scaffold_count": "715",
        "contig_count": "715",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017164735.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "6893",
        "protein_coding_gene_count": "6647",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-04",
    "dateModified": "2021-03-04",
    "datePublished": "2021-03-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinacidiphila bryophytorum"
        ],
        "sample_taxid": [
            "1436133"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "2.068 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7715897",
        "Number of Sequences": "715",
        "Longest Sequences (bp)": "96143",
        "N50 (bp)": "16285",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.4",
        "Number of CDSs": "6094",
        "Average Protein Length": "327.2",
        "Coding Ratio (%)": "77.5",
        "Number of rRNAs": "3",
        "Number of tRNAs": "67",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Actinacidiphila bryophytorum",
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                "relation_to_type": "type",
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            {
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                "status": "below_threshold"
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            {
                "organism_name": "Actinacidiphila epipremni",
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                "relation_to_type": "type",
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Actinacidiphila rubida",
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                "accession": "GCA_900110255.1",
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                "species_taxid": 310780,
                "relation_to_type": "type",
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            {
                "organism_name": "Actinacidiphila guanduensis",
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                "accession": "GCA_900103985.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Actinacidiphila yanglinensis",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces lichenis",
                "strain": "strain=LCR6-01",
                "accession": "GCA_023218175.1",
                "taxid": 2306967,
                "species_taxid": 2306967,
                "relation_to_type": "type",
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                "ani": 80.1855,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinacidiphila oryziradicis",
                "strain": "strain=NEAU-C40",
                "accession": "GCA_005047355.1",
                "taxid": 2571141,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1465,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces harenosi",
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                "accession": "GCA_011008945.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rapamycinicus",
                "strain": "strain=NRRL 5491",
                "accession": "GCA_024298965.1",
                "taxid": 1226757,
                "species_taxid": 1226757,
                "relation_to_type": "type",
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                "ani": 79.5851,
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                "total_fragments": 2208,
                "ani_threshold": 95,
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        ],
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": null,
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    },
    "_genome_taxon": [
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        "bryophytorum"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}