{ "type": "genome", "identifier": "GCF_017254845.1", "organism": "Algoriphagus pacificus", "title": "Algoriphagus pacificus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017254845.1", "bioproject": "PRJNA224116", "biosample": "SAMN17818124", "wgs_master": "JAFKCU000000000.1", "refseq_category": "reference genome", "taxid": "2811234", "species_taxid": "2811234", "organism_name": "Algoriphagus pacificus", "infraspecific_name": "strain=YJ13C", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/06", "asm_name": "ASM1725484v1", "asm_submitter": "Guangdong Institute of Microbiology", "gbrs_paired_asm": "GCA_017254845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/254/845/GCF_017254845.1_ASM1725484v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5284807", "genome_size_ungapped": "5284423", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "51", "contig_count": "51", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017254845.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4519", "protein_coding_gene_count": "4439", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-06", "dateModified": "2021-03-06", "datePublished": "2021-03-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Algoriphagus pacificus" ], "sample_taxid": [ "2811234" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangdong Province" ], "sample_host_location_id": [], "data_size": "1.488 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5284807", "Number of Sequences": "51", "Longest Sequences (bp)": "1587338", "N50 (bp)": "1351052", "Gap Ratio (%)": "0.007266", "GCcontent (%)": "39.1", "Number of CDSs": "4379", "Average Protein Length": "356.1", "Coding Ratio (%)": "88.5", "Number of rRNAs": "5", "Number of tRNAs": "40", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algoriphagus pacificus", "strain": "strain=YJ13C", "accession": "GCA_017254845.1", "taxid": 2811234, "species_taxid": 2811234, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"strain": "strain=DSM 15986", "accession": "GCA_002150685.1", "taxid": 238540, "species_taxid": 238540, "relation_to_type": "type", "validated": true, "ani": 77.4998, "matched_fragments": 346, "total_fragments": 1750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus marinus", "strain": "strain=am2", "accession": "GCA_001936475.1", "taxid": 1925762, "species_taxid": 1925762, "relation_to_type": "type", "validated": true, "ani": 77.2262, "matched_fragments": 324, "total_fragments": 1750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus kandeliae", "strain": "strain=XY-J91", "accession": "GCA_004571135.1", "taxid": 2562278, "species_taxid": 2562278, "relation_to_type": "type", "validated": true, "ani": 77.1423, "matched_fragments": 227, "total_fragments": 1750, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Echinicola salinicaeni", "strain": "strain=P51", "accession": "GCA_014280965.1", 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