{ "type": "genome", "identifier": "GCF_017315705.1", "organism": "Trinickia mobilis", "title": "Trinickia mobilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017315705.1", "bioproject": "PRJNA224116", "biosample": "SAMN18133353", "wgs_master": "JAFLRF000000000.1", "refseq_category": "reference genome", "taxid": "2816356", "species_taxid": "2816356", "organism_name": "Trinickia mobilis", "infraspecific_name": "strain=DHG64", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/10", "asm_name": "ASM1731570v1", "asm_submitter": "Sun Yat-sen University", "gbrs_paired_asm": "GCA_017315705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/315/705/GCF_017315705.1_ASM1731570v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7997074", "genome_size_ungapped": "7994889", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "123", "contig_count": "123", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017315705.1-RS_2024_09_13", "annotation_date": "2024-09-13", "total_gene_count": "7537", "protein_coding_gene_count": "7168", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-10", "dateModified": "2021-03-10", "datePublished": "2021-03-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Trinickia mobilis" ], "sample_taxid": [ "2816356" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Guangdong Province, Dinghushan Biosphere Reserve" ], "sample_host_location_id": [], "data_size": "2.230 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7997074", "Number of Sequences": "123", "Longest Sequences (bp)": "610497", "N50 (bp)": "230160", "Gap Ratio (%)": "0.027335", "GCcontent (%)": "62.9", "Number of CDSs": "7264", "Average Protein Length": "307.0", "Coding Ratio (%)": "83.6", "Number of rRNAs": "2", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Burkholderia oklahomensis", "strain": "strain=C6786", "accession": "GCA_000170375.1", "taxid": 342113, "species_taxid": 342113, "relation_to_type": "type", "validated": true, "ani": 82.5485, 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2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia oklahomensis", "strain": "strain=C6786", "accession": "GCA_001522135.2", "taxid": 342113, "species_taxid": 342113, "relation_to_type": "type", "validated": true, "ani": 82.4585, "matched_fragments": 1014, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia phosphatilytica", "strain": "strain=7QSK02", "accession": "GCA_003443895.1", "taxid": 2282883, "species_taxid": 2282883, "relation_to_type": "type", "validated": true, "ani": 82.3879, "matched_fragments": 1152, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia thailandensis", "strain": "strain=E264; ATCC 700388", "accession": "GCA_000012365.1", "taxid": 57975, "species_taxid": 57975, "relation_to_type": "type", "validated": true, "ani": 82.3692, "matched_fragments": 990, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=ATCC BAA-247", "accession": "GCA_000286555.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 82.3044, "matched_fragments": 863, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=ATCC BAA-247", "accession": "GCA_000959525.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 82.2709, "matched_fragments": 995, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia thailandensis", "strain": "strain=E264", "accession": "GCA_003568605.1", "taxid": 57975, "species_taxid": 57975, "relation_to_type": "type", "validated": true, "ani": 82.2547, "matched_fragments": 993, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia multivorans", "strain": "strain=NCTC13007", "accession": "GCA_900446205.1", "taxid": 87883, "species_taxid": 87883, "relation_to_type": "type", "validated": true, "ani": 82.2534, "matched_fragments": 999, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia piptadeniae", "strain": "strain=STM 7183", "accession": "GCA_900007165.2", "taxid": 1701573, "species_taxid": 1701573, "relation_to_type": "type", "validated": true, "ani": 82.2244, "matched_fragments": 1194, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia territorii", "strain": "strain=CCUG 65687", "accession": "GCA_008802115.1", "taxid": 1503055, "species_taxid": 1503055, "relation_to_type": "type", "validated": true, "ani": 82.2061, "matched_fragments": 731, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia diazotrophica", "strain": "strain=LMG 26031", "accession": "GCA_900108945.1", "taxid": 667676, "species_taxid": 667676, "relation_to_type": "type", "validated": true, "ani": 82.1953, "matched_fragments": 1162, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "", "accession": "GCA_902499185.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 82.1868, "matched_fragments": 1062, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "strain=LMG 20358", "accession": "GCA_902833085.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 82.1553, "matched_fragments": 1094, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia thailandensis", "strain": "strain=ATCC 700388", "accession": "GCA_000152285.1", "taxid": 57975, "species_taxid": 57975, "relation_to_type": "type", "validated": true, "ani": 82.1552, "matched_fragments": 939, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia latens", "strain": "", "accession": "GCA_902499045.1", "taxid": 488446, "species_taxid": 488446, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1516, "matched_fragments": 973, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pseudomultivorans", "strain": "", "accession": "GCA_902499075.1", "taxid": 1207504, "species_taxid": 1207504, "relation_to_type": "suspected-type", "validated": true, "ani": 82.1406, "matched_fragments": 1028, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia territorii", "strain": "", "accession": "GCA_902499035.1", "taxid": 1503055, "species_taxid": 1503055, "relation_to_type": "type", "validated": true, "ani": 82.1034, "matched_fragments": 983, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia territorii", "strain": "strain=LMG 28158", "accession": "GCA_902833055.1", "taxid": 1503055, "species_taxid": 1503055, "relation_to_type": "type", "validated": true, "ani": 82.0947, "matched_fragments": 990, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 82.0087, "matched_fragments": 1140, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia anthina", "strain": "strain=DSM 16086", "accession": "GCA_016836725.1", "taxid": 179879, "species_taxid": 179879, "relation_to_type": "suspected-type", "validated": true, "ani": 81.9041, "matched_fragments": 1004, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia graminis", "strain": "strain=LMG 18924", "accession": "GCA_902859785.1", "taxid": 60548, "species_taxid": 60548, "relation_to_type": "type", "validated": true, "ani": 81.8034, "matched_fragments": 1041, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia ribeironis", "strain": "strain=STM 7296", "accession": "GCA_900019265.2", "taxid": 1247936, "species_taxid": 1247936, "relation_to_type": "type", "validated": true, "ani": 81.796, "matched_fragments": 983, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia graminis", "strain": "strain=C4D1M", "accession": "GCA_000172415.1", "taxid": 60548, "species_taxid": 60548, "relation_to_type": "type", "validated": true, "ani": 81.6793, "matched_fragments": 1020, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia acidisoli", "strain": "strain=DHF22", "accession": "GCA_009789675.1", "taxid": 2571748, "species_taxid": 2571748, "relation_to_type": "type", "validated": true, "ani": 81.2712, "matched_fragments": 1027, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia guartelaensis", "strain": "strain=CNPSo 3008", "accession": "GCA_004353905.1", "taxid": 2546446, "species_taxid": 2546446, "relation_to_type": "type", "validated": true, "ani": 81.261, "matched_fragments": 1093, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia pallida", "strain": "strain=7MH5", "accession": "GCA_004524855.1", "taxid": 2547399, "species_taxid": 2547399, "relation_to_type": "type", "validated": true, "ani": 81.2139, "matched_fragments": 1192, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia caryophylli", "strain": "strain=LMG 2155", "accession": "GCA_902833925.1", "taxid": 28094, "species_taxid": 28094, "relation_to_type": "type", "validated": true, "ani": 80.6043, "matched_fragments": 860, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia caryophylli", "strain": "strain=Ballard 720", "accession": "GCA_002879875.1", "taxid": 28094, "species_taxid": 28094, "relation_to_type": "type", "validated": true, "ani": 80.5675, "matched_fragments": 863, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia caryophylli", "strain": "strain=DSM 50341", "accession": "GCA_007097545.1", "taxid": 28094, "species_taxid": 28094, "relation_to_type": "type", "validated": true, "ani": 80.5445, "matched_fragments": 872, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trinickia caryophylli", "strain": "strain=HAMBI_2159", "accession": "GCA_003350265.1", "taxid": 28094, "species_taxid": 28094, "relation_to_type": "type", "validated": true, "ani": 80.4984, "matched_fragments": 873, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera terpenica", "strain": "strain=58Eu", "accession": "GCA_000443165.1", "taxid": 76113, "species_taxid": 76113, "relation_to_type": "type", "validated": true, "ani": 76.0616, "matched_fragments": 153, "total_fragments": 2602, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017315705.1", "gtdb_species": "s__Trinickia sp017315705", "ani": 100.0, "matched_fragments": 2599, "total_fragments": 2602, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Trinickia", "ani_circumscription_radius": 95.0, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013403875.1", "gtdb_species": "s__Burkholderia guangdongensis", "ani": 82.2045, "matched_fragments": 971, "total_fragments": 2602, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014211915.1", "gtdb_species": "s__Burkholderia cenocepacia_B", "ani": 82.1905, "matched_fragments": 1004, "total_fragments": 2602, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.1666, "mean_intra_species_ani": "97.84", 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