{
    "type": "genome",
    "identifier": "GCF_017349355.1",
    "organism": "Thiothrix fructosivorans",
    "title": "Thiothrix fructosivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "NEB",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017349355.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18095003",
        "wgs_master": "JAFMPM000000000.1",
        "refseq_category": "reference genome",
        "taxid": "111770",
        "species_taxid": "111770",
        "organism_name": "Thiothrix fructosivorans",
        "infraspecific_name": "strain=ATCC 49748",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/13",
        "asm_name": "ASM1734935v1",
        "asm_submitter": "NEB",
        "gbrs_paired_asm": "GCA_017349355.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/349/355/GCF_017349355.1_ASM1734935v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4355037",
        "genome_size_ungapped": "4355037",
        "gc_percent": "51.500000",
        "replicon_count": "5",
        "scaffold_count": "8",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017349355.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "4296",
        "protein_coding_gene_count": "4188",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-13",
    "dateModified": "2021-03-13",
    "datePublished": "2021-03-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thiothrix fructosivorans"
        ],
        "sample_taxid": [
            "111770"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "na"
        ],
        "sample_host_location_id": [],
        "data_size": "1.224 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4355037",
        "Number of Sequences": "8",
        "Longest Sequences (bp)": "1938437",
        "N50 (bp)": "1467533",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.3",
        "Number of CDSs": "4249",
        "Average Protein Length": "311.5",
        "Coding Ratio (%)": "91.2",
        "Number of rRNAs": "6",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "12"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Thiothrix fructosivorans",
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                "accession": "GCA_017349355.1",
                "taxid": 111770,
                "species_taxid": 111770,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1449,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "accession": "GCA_016772315.1",
                "taxid": 2735563,
                "species_taxid": 2735563,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5128,
                "matched_fragments": 846,
                "total_fragments": 1449,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiothrix winogradskyi",
                "strain": "strain=CT3",
                "accession": "GCA_021650935.1",
                "taxid": 96472,
                "species_taxid": 96472,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1449,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiothrix caldifontis",
                "strain": "strain=DSM 21228",
                "accession": "GCA_900107695.1",
                "taxid": 525918,
                "species_taxid": 525918,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.622,
                "matched_fragments": 774,
                "total_fragments": 1449,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiothrix unzii",
                "strain": "strain=A1",
                "accession": "GCA_017901175.1",
                "taxid": 111769,
                "species_taxid": 111769,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1819,
                "matched_fragments": 563,
                "total_fragments": 1449,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiothrix lacustris",
                "strain": "strain=DSM 21227",
                "accession": "GCA_000621325.1",
                "taxid": 525917,
                "species_taxid": 525917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.115,
                "matched_fragments": 782,
                "total_fragments": 1449,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiothrix litoralis",
                "strain": "strain=AS",
                "accession": "GCA_017901135.1",
                "taxid": 2891210,
                "species_taxid": 2891210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.024,
                "matched_fragments": 828,
                "total_fragments": 1449,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017349355.1",
                "gtdb_species": "s__Thiothrix fructosivorans",
                "ani": 100.0,
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                "total_fragments": 1449,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_016772315.1",
                "gtdb_species": "s__Thiothrix sp016772315",
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                "matched_fragments": 847,
                "total_fragments": 1449,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900107695.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017901175.1",
                "gtdb_species": "s__Thiothrix unzii",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000621325.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_017901135.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017901155.1",
                "gtdb_species": "s__Thiothrix sp017901155",
                "ani": 81.9511,
                "matched_fragments": 496,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
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        "cell_length": 0.431,
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        "coding_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.833,
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        "filament_cell_shape": 0.166,
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    "_genome_taxon": [
        "Thiothrix",
        "fructosivorans"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}