{ "type": "genome", "identifier": "GCF_017352155.2", "organism": "Haloterrigena alkaliphila", "title": "Haloterrigena alkaliphila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangsu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017352155.2", "bioproject": "PRJNA224116", "biosample": "SAMN18137898", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2816475", "species_taxid": "2816475", "organism_name": "Haloterrigena alkaliphila", "infraspecific_name": "strain=KZCA68", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/10/19", "asm_name": "ASM1735215v2", "asm_submitter": "Jiangsu University", "gbrs_paired_asm": "GCA_017352155.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/352/155/GCF_017352155.2_ASM1735215v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "4270687", "genome_size_ungapped": "4270687", "gc_percent": "65.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017352155.2-RS_2024_05_12", "annotation_date": "2024-05-12", "total_gene_count": "4204", "protein_coding_gene_count": "4065", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-10-19", "dateModified": "2021-10-19", "datePublished": "2021-10-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Haloterrigena alkaliphila" ], "sample_taxid": [ "2816475" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.164 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4270687", "Number of Sequences": "3", "Longest Sequences (bp)": "3823492", "N50 (bp)": "3823492", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.2", "Number of CDSs": "4117", "Average Protein Length": "289.3", "Coding Ratio (%)": "83.7", "Number of rRNAs": "7", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Haloterrigena alkaliphila", "strain": "strain=KZCA68", "accession": "GCA_017352155.2", "taxid": 2816475, "species_taxid": 2816475, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1421, "total_fragments": 1422, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Haloterrigena salina", "strain": "strain=JCM 13891", "accession": "GCA_000337495.1", "taxid": 504937, "species_taxid": 504937, "relation_to_type": "type", "validated": true, "ani": 85.9044, "matched_fragments": 999, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena turkmenica", "strain": "strain=DSM 5511", "accession": "GCA_000025325.1", "taxid": 62320, "species_taxid": 62320, "relation_to_type": "type", "validated": true, "ani": 85.9013, "matched_fragments": 1029, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena salifodinae", "strain": "strain=ZY19", "accession": "GCA_003977755.1", "taxid": 2675099, "species_taxid": 2675099, "relation_to_type": "type", "validated": true, "ani": 85.5126, "matched_fragments": 983, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronorubrum halophilum", "strain": "strain=SHR37", "accession": "GCA_003670115.1", "taxid": 1702106, "species_taxid": 1702106, "relation_to_type": "type", "validated": true, "ani": 82.6929, "matched_fragments": 874, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopiger aswanensis", "strain": "strain=DSM 13151", "accession": "GCA_003610195.1", "taxid": 148449, "species_taxid": 148449, "relation_to_type": "type", "validated": true, "ani": 82.65, "matched_fragments": 839, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronorubrum halalkaliphilum", "strain": "strain=JWXQ-INN-674", "accession": "GCA_009834785.1", "taxid": 2691917, "species_taxid": 2691917, "relation_to_type": "type", "validated": true, "ani": 82.3349, "matched_fragments": 856, "total_fragments": 1422, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017352155.1", "gtdb_species": "s__Haloterrigena sp017352155", "ani": 100.0, "matched_fragments": 1273, "total_fragments": 1422, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Haloterrigena", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013342135.1", "gtdb_species": "s__Haloterrigena sp013342135", "ani": 86.0781, "matched_fragments": 1016, "total_fragments": 1422, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Haloterrigena", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000337495.1", "gtdb_species": "s__Haloterrigena salina", "ani": 85.9032, "matched_fragments": 1000, "total_fragments": 1422, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Haloterrigena", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000025325.1", "gtdb_species": "s__Haloterrigena turkmenica", "ani": 85.8955, "matched_fragments": 1030, "total_fragments": 1422, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Haloterrigena", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003977755.1", "gtdb_species": "s__Haloterrigena salifodinae", "ani": 85.4894, "matched_fragments": 985, "total_fragments": 1422, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Haloterrigena", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "98.23", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900100335.1", "gtdb_species": "s__Natronorubrum texcoconense", "ani": 82.9416, "matched_fragments": 916, "total_fragments": 1422, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009834785.1", "gtdb_species": "s__Natronorubrum halalkaliphilum", "ani": 82.335, "matched_fragments": 856, "total_fragments": 1422, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronorubrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.16, "cell_length": 0.231, "doubling_h": 0.176, "growth_tmp": 39.0, "optimum_tmp": 41.916, "optimum_ph": 7.825, "genome_size": 4144907.041, "gc_content": 62.398, "coding_genes": 4323.416, "rRNA16S_genes": 2.5, "tRNA_genes": 47.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.166, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.625, "coccus_cell_shape": 0.375, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Haloterrigena", "alkaliphila" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }