{ "type": "genome", "identifier": "GCF_017353175.1", "organism": "Fibrella forsythiae", "title": "Fibrella forsythiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hankuk University of Foreign Studies", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017353175.1", "bioproject": "PRJNA224116", "biosample": "SAMN18203615", "wgs_master": "JAFMYW000000000.1", "refseq_category": "reference genome", "taxid": "2817061", "species_taxid": "2817061", "organism_name": "Fibrella forsythiae", "infraspecific_name": "strain=HMF5405", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/14", "asm_name": "ASM1735317v1", "asm_submitter": "Hankuk University of Foreign Studies", "gbrs_paired_asm": "GCA_017353175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/353/175/GCF_017353175.1_ASM1735317v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7757920", "genome_size_ungapped": "7757920", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017353175.1-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "6596", "protein_coding_gene_count": "6505", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-14", "dateModified": "2021-03-14", "datePublished": "2021-03-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Fibrella forsythiae" ], "sample_taxid": [ "2817061" ], "sample_host_organism": [ "forsythia" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yong-in" ], "sample_host_location_id": [], "data_size": "2.211 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7757920", "Number of Sequences": "82", "Longest Sequences (bp)": "1406316", "N50 (bp)": "598121", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.1", "Number of CDSs": "6454", "Average Protein Length": "345.5", "Coding Ratio (%)": "86.2", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fibrella aestuarina", "strain": "strain=BUZ 2", "accession": "GCA_000331105.1", "taxid": 651143, "species_taxid": 651143, "relation_to_type": "type", "validated": true, "ani": 77.8987, "matched_fragments": 671, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella rubiginis", "strain": "strain=HMF5335", "accession": "GCA_017353185.1", "taxid": 2817060, "species_taxid": 2817060, "relation_to_type": "type", "validated": true, "ani": 77.622, "matched_fragments": 567, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrella aquatilis", "strain": "strain=HMF5036", "accession": "GCA_017353255.1", "taxid": 2817059, "species_taxid": 2817059, "relation_to_type": "type", "validated": true, "ani": 77.5312, "matched_fragments": 567, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 76.8855, "matched_fragments": 281, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma utsteinense", "strain": "strain=LMG 31447", "accession": "GCA_014282275.1", "taxid": 2585773, "species_taxid": 2585773, "relation_to_type": "type", "validated": true, "ani": 76.7405, "matched_fragments": 265, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma sordidisoli", "strain": "strain=TY50", "accession": "GCA_004138325.1", "taxid": 2502893, "species_taxid": 2502893, "relation_to_type": "type", "validated": true, "ani": 76.7157, "matched_fragments": 301, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma oryzae", "strain": "strain=DSM 28354", "accession": "GCA_003002825.1", "taxid": 1469603, "species_taxid": 1469603, "relation_to_type": "type", "validated": true, "ani": 76.6574, "matched_fragments": 255, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rudanella paleaurantiibacter", "strain": "strain=HX-22-17", "accession": "GCA_009184635.1", "taxid": 2614655, "species_taxid": 2614655, "relation_to_type": "type", "validated": true, "ani": 76.6199, "matched_fragments": 251, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma rigui", "strain": "strain=KCTC 12531", "accession": "GCA_002067135.1", "taxid": 564064, "species_taxid": 564064, "relation_to_type": "type", "validated": true, "ani": 76.5767, "matched_fragments": 258, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma agri", "strain": "strain=KCTC 52727", "accession": "GCA_010747415.1", "taxid": 1987381, "species_taxid": 1987381, "relation_to_type": "type", "validated": true, "ani": 76.3873, "matched_fragments": 253, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma validum", "strain": "strain=BT704", "accession": "GCA_014699035.1", "taxid": 2771355, "species_taxid": 2771355, "relation_to_type": "type", "validated": true, "ani": 76.3584, "matched_fragments": 201, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fibrisoma limi", "strain": "strain=BUZ 3", "accession": "GCA_000296815.2", "taxid": 663275, "species_taxid": 663275, "relation_to_type": "type", "validated": true, "ani": 76.2689, "matched_fragments": 227, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma aureum", "strain": "strain=BT328", "accession": "GCA_011604685.1", "taxid": 2692134, "species_taxid": 2692134, "relation_to_type": "type", "validated": true, "ani": 76.111, "matched_fragments": 212, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Larkinella humicola", "strain": "strain=MA1", "accession": "GCA_008727875.1", "taxid": 2607654, "species_taxid": 2607654, "relation_to_type": "type", "validated": true, "ani": 76.0988, "matched_fragments": 217, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma endbachense", "strain": "strain=I-24", "accession": "GCA_010233585.1", "taxid": 2666025, "species_taxid": 2666025, "relation_to_type": "type", "validated": true, "ani": 76.0522, "matched_fragments": 222, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siphonobacter aquaeclarae", "strain": "strain=DSM 21668", "accession": "GCA_900103285.1", "taxid": 563176, "species_taxid": 563176, "relation_to_type": "type", "validated": true, "ani": 75.6731, "matched_fragments": 58, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 75.462, "matched_fragments": 78, "total_fragments": 2556, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017353175.1", "gtdb_species": "s__Fibrella sp017353175", "ani": 100.0, "matched_fragments": 2554, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Fibrella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002108455.1", "gtdb_species": "s__Fibrella sp002108455", "ani": 80.7148, "matched_fragments": 1233, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Fibrella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000331105.1", "gtdb_species": "s__Fibrella aestuarina", "ani": 77.8967, "matched_fragments": 672, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Fibrella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017353185.1", "gtdb_species": "s__Fibrella sp017353185", "ani": 77.6064, "matched_fragments": 570, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Fibrella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017353255.1", "gtdb_species": "s__Fibrella sp017353255", "ani": 77.5318, "matched_fragments": 567, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Fibrella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013375035.1", "gtdb_species": "s__Spirosoma sp013375035", "ani": 76.7436, "matched_fragments": 209, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003002825.1", "gtdb_species": "s__Spirosoma oryzae", "ani": 76.6493, "matched_fragments": 257, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009184635.1", "gtdb_species": "s__Rudanella paleaurantiibacter", "ani": 76.6275, "matched_fragments": 252, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Rudanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002067135.1", "gtdb_species": "s__Spirosoma rigui", "ani": 76.5775, "matched_fragments": 259, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014377625.1", "gtdb_species": "s__Spirosoma sp014377625", "ani": 76.4117, "matched_fragments": 177, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000296815.2", "gtdb_species": "s__Fibrisoma limi", "ani": 76.2636, "matched_fragments": 229, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Fibrisoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011604685.1", "gtdb_species": "s__Spirosoma aureum", "ani": 76.116, "matched_fragments": 214, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014699005.1", "gtdb_species": "s__Spirosoma profusum", "ani": 76.0944, "matched_fragments": 209, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Spirosoma", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016427455.1", "gtdb_species": "s__Hymenobacter sp016427455", "ani": 75.4514, "matched_fragments": 69, "total_fragments": 2556, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.46", "min_intra_species_ani": "95.46", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.097, "cell_length": 0.602, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 27.5, "optimum_ph": 7.0, "genome_size": 6937263.0, "gc_content": null, "coding_genes": 5627.0, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Fibrella", "forsythiae" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }