{ "type": "genome", "identifier": "GCF_017354945.1", "organism": "Shewanella avicenniae", "title": "Shewanella avicenniae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Agricultural Bio-resources Research Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017354945.1", "bioproject": "PRJNA224116", "biosample": "SAMN18035030", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2814294", "species_taxid": "2814294", "organism_name": "Shewanella avicenniae", "infraspecific_name": "strain=FJAT-51800", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/15", "asm_name": "ASM1735494v1", "asm_submitter": "Agricultural Bio-resources Research Institute", "gbrs_paired_asm": "GCA_017354945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/354/945/GCF_017354945.1_ASM1735494v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4201682", "genome_size_ungapped": "4201682", "gc_percent": "48.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017354945.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3737", "protein_coding_gene_count": "3589", "non_coding_gene_count": "120", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-15", "dateModified": "2021-03-15", "datePublished": "2021-03-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella avicenniae" ], "sample_taxid": [ "2814294" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Fujian Provience" ], "sample_host_location_id": [], "data_size": "1.192 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4201682", "Number of Sequences": "1", "Longest Sequences (bp)": "4201682", "N50 (bp)": "4201682", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.3", "Number of CDSs": "3607", "Average Protein Length": "337.5", "Coding Ratio (%)": "86.9", "Number of rRNAs": "22", "Number of tRNAs": "93", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Shewanella avicenniae", "strain": "strain=FJAT-51800", "accession": "GCA_017354945.1", "taxid": 2814294, "species_taxid": 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79.1059, "matched_fragments": 229, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella baltica", "strain": "strain=NCTC10735", "accession": "GCA_900456975.1", "taxid": 62322, "species_taxid": 62322, "relation_to_type": "type", "validated": true, "ani": 79.0133, "matched_fragments": 210, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella denitrificans", "strain": "strain=OS217", "accession": "GCA_000013765.1", "taxid": 192073, "species_taxid": 192073, "relation_to_type": "type", "validated": true, "ani": 78.9907, "matched_fragments": 123, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella dokdonensis", "strain": "strain=DSM 23626", "accession": "GCA_018394335.1", "taxid": 712036, "species_taxid": 712036, "relation_to_type": "type", "validated": true, "ani": 78.5746, "matched_fragments": 307, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella vesiculosa", "strain": "strain=M7", "accession": "GCA_021560015.1", "taxid": 518738, "species_taxid": 518738, "relation_to_type": "type", "validated": true, "ani": 78.5163, "matched_fragments": 147, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella corallii", "strain": "strain=DSM 21332", "accession": "GCA_023349125.1", "taxid": 560080, "species_taxid": 560080, "relation_to_type": "type", "validated": true, "ani": 78.5048, "matched_fragments": 156, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella litorisediminis", "strain": "strain=CCUG 62411", "accession": "GCA_023349165.1", "taxid": 1173586, "species_taxid": 1173586, "relation_to_type": "type", "validated": true, "ani": 78.4102, "matched_fragments": 162, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella chilikensis", "strain": "strain=CCUG 57101", "accession": "GCA_023283475.1", "taxid": 558541, "species_taxid": 558541, "relation_to_type": "type", "validated": true, "ani": 78.3161, "matched_fragments": 206, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella algae", "strain": "strain=ATCC 51192", "accession": "GCA_012396675.1", "taxid": 38313, "species_taxid": 38313, "relation_to_type": "type", "validated": true, "ani": 78.3088, "matched_fragments": 224, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella xiamenensis", "strain": "strain=JCM 16212", "accession": "GCA_014647135.1", "taxid": 332186, "species_taxid": 332186, "relation_to_type": "type", "validated": true, "ani": 78.2112, "matched_fragments": 205, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella decolorationis", "strain": "strain=S12", "accession": "GCA_000485795.1", "taxid": 256839, "species_taxid": 256839, "relation_to_type": "type", "validated": true, "ani": 78.1045, "matched_fragments": 223, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella algae", "strain": "strain=NBRC 103173", "accession": "GCA_001598875.1", "taxid": 38313, "species_taxid": 38313, "relation_to_type": "type", "validated": true, "ani": 78.0606, "matched_fragments": 214, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parashewanella hymeniacidonis", "strain": "strain=202IG2-18", "accession": "GCA_016900895.1", "taxid": 2807618, "species_taxid": 2807618, "relation_to_type": "type", "validated": true, "ani": 77.9399, "matched_fragments": 92, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella seohaensis", "strain": "strain=CCUG 60900", "accession": "GCA_023283775.1", "taxid": 755175, "species_taxid": 755175, "relation_to_type": "type", "validated": true, "ani": 77.8175, "matched_fragments": 219, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella profunda", "strain": "strain=DSM 15900", "accession": "GCA_023283765.1", "taxid": 254793, "species_taxid": 254793, "relation_to_type": "type", "validated": true, "ani": 77.7341, "matched_fragments": 179, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=KCTC 42807", "accession": "GCA_023283595.1", "taxid": 1738770, "species_taxid": 1738770, "relation_to_type": "type", "validated": true, "ani": 77.6678, "matched_fragments": 139, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marisflavi", "strain": "strain=JCM 12192", "accession": "GCA_023283925.1", "taxid": 260364, "species_taxid": 260364, 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