{ "type": "genome", "identifier": "GCF_017357825.1", "organism": "Sulfurimonas aquatica", "title": "Sulfurimonas aquatica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hokkaido University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017357825.1", "bioproject": "PRJNA224116", "biosample": "SAMN13282811", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2672570", "species_taxid": "2672570", "organism_name": "Sulfurimonas aquatica", "infraspecific_name": "strain=H1576", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/16", "asm_name": "ASM1735782v1", "asm_submitter": "Hokkaido University", "gbrs_paired_asm": "GCA_017357825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/357/825/GCF_017357825.1_ASM1735782v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2845050", "genome_size_ungapped": "2845050", "gc_percent": "34.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017357825.1-RS_2024_05_27", "annotation_date": "2024-05-27", "total_gene_count": "2732", "protein_coding_gene_count": "2658", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-16", "dateModified": "2021-03-16", "datePublished": "2021-03-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Sulfurimonas aquatica" ], "sample_taxid": [ "2672570" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Lake Harutori" ], "sample_host_location_id": [], "data_size": "0.785 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2845050", "Number of Sequences": "2", "Longest Sequences (bp)": "2763158", "N50 (bp)": "2763158", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.7", "Number of CDSs": "2687", "Average Protein Length": "328.6", "Coding Ratio (%)": "93.1", "Number of rRNAs": "8", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Candidatus Sulfurimonas marisnigri", "strain": "strain=SoZ1", "accession": "GCA_015265475.1", "taxid": 2740405, "species_taxid": 2740405, "relation_to_type": "type", "validated": true, "ani": 78.8581, "matched_fragments": 209, "total_fragments": 948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas gotlandica", "strain": "strain=GD 1", "accession": "GCA_000156095.1", "taxid": 1176482, "species_taxid": 1176482, "relation_to_type": "type", "validated": true, "ani": 78.6581, "matched_fragments": 218, "total_fragments": 948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas gotlandica", "strain": "strain=GD1", "accession": "GCA_000242915.2", "taxid": 1176482, "species_taxid": 1176482, "relation_to_type": "type", "validated": true, "ani": 78.5432, "matched_fragments": 226, "total_fragments": 948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Sulfurimonas baltica", "strain": "strain=GD2", "accession": "GCA_015265455.1", "taxid": 2740404, "species_taxid": 2740404, "relation_to_type": "type", "validated": true, "ani": 78.5307, "matched_fragments": 188, "total_fragments": 948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas hydrogeniphila", "strain": "strain=NW10", "accession": "GCA_009068765.1", "taxid": 2509341, "species_taxid": 2509341, "relation_to_type": "type", "validated": true, "ani": 78.519, "matched_fragments": 134, "total_fragments": 948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas autotrophica", "strain": "strain=DSM 16294", "accession": "GCA_000147355.1", "taxid": 202747, "species_taxid": 202747, "relation_to_type": "type", "validated": true, "ani": 78.4661, "matched_fragments": 207, "total_fragments": 948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas sediminis", "strain": "strain=S2-6", "accession": "GCA_014905115.1", "taxid": 2590020, "species_taxid": 2590020, "relation_to_type": "type", "validated": true, "ani": 78.4442, "matched_fragments": 152, "total_fragments": 948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas xiamenensis", "strain": "strain=1-1N", "accession": "GCA_009258045.1", "taxid": 2590021, "species_taxid": 2590021, "relation_to_type": "type", "validated": true, "ani": 78.4205, "matched_fragments": 134, "total_fragments": 948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas paralvinellae", "strain": "strain=GO25", "accession": "GCA_014905135.1", "taxid": 317658, "species_taxid": 317658, "relation_to_type": "type", "validated": true, "ani": 78.3251, "matched_fragments": 147, "total_fragments": 948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas indica", "strain": "strain=NW8N", "accession": "GCA_009192995.1", "taxid": 2508707, "species_taxid": 2508707, "relation_to_type": "type", "validated": true, "ani": 78.2417, "matched_fragments": 185, "total_fragments": 948, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimonas hongkongensis", "strain": "strain=AST-10", "accession": "GCA_000445475.1", "taxid": 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