{
    "type": "genome",
    "identifier": "GCF_017368455.1",
    "organism": "Proteiniclasticum aestuarii",
    "title": "Proteiniclasticum aestuarii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Korea Institute of Ocean Science and Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017368455.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18236374",
        "wgs_master": "JAFNJU000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2817862",
        "species_taxid": "2817862",
        "organism_name": "Proteiniclasticum aestuarii",
        "infraspecific_name": "strain=SCR006",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/16",
        "asm_name": "ASM1736845v1",
        "asm_submitter": "Korea Institute of Ocean Science and Technology",
        "gbrs_paired_asm": "GCA_017368455.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/368/455/GCF_017368455.1_ASM1736845v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3184189",
        "genome_size_ungapped": "3184189",
        "gc_percent": "45.500000",
        "replicon_count": "0",
        "scaffold_count": "33",
        "contig_count": "33",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017368455.1-RS_2024_04_30",
        "annotation_date": "2024-04-30",
        "total_gene_count": "3054",
        "protein_coding_gene_count": "2969",
        "non_coding_gene_count": "74",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-16",
    "dateModified": "2021-03-16",
    "datePublished": "2021-03-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Proteiniclasticum aestuarii"
        ],
        "sample_taxid": [
            "2817862"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.899 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3184189",
        "Number of Sequences": "33",
        "Longest Sequences (bp)": "593628",
        "N50 (bp)": "244601",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.6",
        "Number of CDSs": "3019",
        "Average Protein Length": "308.4",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "5",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Proteiniclasticum aestuarii",
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                "species_taxid": 2817862,
                "relation_to_type": "type",
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                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Proteiniclasticum ruminis",
                "strain": "strain=DSM 24773",
                "accession": "GCA_000701905.1",
                "taxid": 398199,
                "species_taxid": 398199,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7335,
                "matched_fragments": 298,
                "total_fragments": 1046,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Proteiniclasticum sediminis",
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                "accession": "GCA_018128025.1",
                "taxid": 2804028,
                "species_taxid": 2804028,
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                "matched_fragments": 189,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_017368455.1",
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                "ani": 100.0,
                "matched_fragments": 1045,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Proteiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_009930125.1",
                "gtdb_species": "s__Proteiniclasticum sp009930125",
                "ani": 93.1119,
                "matched_fragments": 538,
                "total_fragments": 1046,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Proteiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900115135.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Proteiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000701905.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Proteiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.65",
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                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
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            },
            {
                "accession": "GCA_003514505.1",
                "gtdb_species": "s__Proteiniclasticum sp003514505",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Proteiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_018128025.1",
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                "matched_fragments": 189,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Proteiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003510765.1",
                "gtdb_species": "s__Proteiniclasticum sp003510765",
                "ani": 77.4187,
                "matched_fragments": 82,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Proteiniclasticum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": -0.222,
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        "genome_size": 3136916.667,
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        "rRNA16S_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Proteiniclasticum",
        "aestuarii"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}