{ "type": "genome", "identifier": "GCF_017426725.1", "organism": "Prevotella illustrans", "title": "Prevotella illustrans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Tuebingen University Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017426725.1", "bioproject": "PRJNA224116", "biosample": "SAMN17198783", "wgs_master": "JAERMS000000000.1", "refseq_category": "reference genome", "taxid": "2800387", "species_taxid": "2800387", "organism_name": "Prevotella illustrans", "infraspecific_name": "strain=A2931", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/18", "asm_name": "ASM1742672v1", "asm_submitter": "Tuebingen University Hospital", "gbrs_paired_asm": "GCA_017426725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/426/725/GCF_017426725.1_ASM1742672v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3088950", "genome_size_ungapped": "3088461", "gc_percent": "47.500000", "replicon_count": "0", "scaffold_count": "139", "contig_count": "139", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017426725.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2482", "protein_coding_gene_count": "2382", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-18", "dateModified": "2021-03-18", "datePublished": "2021-03-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella illustrans" ], "sample_taxid": [ "2800387" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.890 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3088950", "Number of Sequences": "139", "Longest Sequences (bp)": "269672", "N50 (bp)": "62172", "Gap Ratio (%)": "0.015831", "GCcontent (%)": "47.6", "Number of CDSs": "2375", "Average Protein Length": "373.3", "Coding Ratio (%)": "86.1", "Number of rRNAs": "1", "Number of tRNAs": "49", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 975, "total_fragments": 981, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella baroniae", "strain": "strain=DSM 16972", "accession": "GCA_000426585.1", "taxid": 305719, "species_taxid": 305719, "relation_to_type": "type", "validated": true, "ani": 84.1486, "matched_fragments": 592, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella baroniae", "strain": "strain=JCM 13447", "accession": "GCA_000613565.1", "taxid": 305719, "species_taxid": 305719, "relation_to_type": "type", "validated": true, "ani": 84.1337, "matched_fragments": 585, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella vespertina", "strain": "strain=A2879", "accession": "GCA_009728485.1", "taxid": 2608404, "species_taxid": 2608404, "relation_to_type": "type", "validated": true, "ani": 81.4609, "matched_fragments": 71, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella seregens", "strain": "strain=ATCC 51272", "accession": "GCA_000518545.1", "taxid": 52229, "species_taxid": 52229, "relation_to_type": "type", "validated": true, "ani": 80.468, "matched_fragments": 121, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oris", "strain": "strain=DSM 18711", "accession": "GCA_000377685.1", "taxid": 28135, "species_taxid": 28135, "relation_to_type": "type", "validated": true, "ani": 80.2448, "matched_fragments": 133, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella dentalis", "strain": "strain=DSM 3688", "accession": "GCA_000242335.3", "taxid": 52227, "species_taxid": 52227, "relation_to_type": "type", "validated": true, "ani": 79.1601, "matched_fragments": 115, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella shahii", "strain": "strain=DSM 15611", "accession": "GCA_003201715.1", "taxid": 228603, "species_taxid": 228603, "relation_to_type": "type", "validated": true, "ani": 79.1285, "matched_fragments": 51, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 79.0686, "matched_fragments": 143, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella shahii", "strain": "strain=JCM 12083", "accession": "GCA_000613445.1", "taxid": 228603, "species_taxid": 228603, "relation_to_type": "type", "validated": true, "ani": 78.9989, "matched_fragments": 50, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella pectinovora", "strain": "strain=P4-76", "accession": "GCA_000834015.1", "taxid": 1602169, "species_taxid": 1602169, "relation_to_type": "type", "validated": true, "ani": 78.5873, "matched_fragments": 56, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oralis", "strain": "strain=ATCC 33269", "accession": "GCA_000185145.2", "taxid": 28134, "species_taxid": 28134, "relation_to_type": "type", "validated": true, "ani": 78.2101, "matched_fragments": 83, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella oralis", "strain": "strain=DSM 20702", "accession": "GCA_900129435.1", "taxid": 28134, "species_taxid": 28134, "relation_to_type": "type", "validated": true, "ani": 78.1646, "matched_fragments": 82, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_025151535.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 77.714, "matched_fragments": 75, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella bergensis", "strain": "strain=DSM 17361", "accession": "GCA_000160535.1", "taxid": 242750, "species_taxid": 242750, "relation_to_type": "type", "validated": true, "ani": 77.631, "matched_fragments": 82, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=JCM 12258", "accession": "GCA_000613525.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 77.3874, "matched_fragments": 61, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella albensis", "strain": "strain=DSM 11370", "accession": "GCA_000426565.1", "taxid": 77768, "species_taxid": 77768, "relation_to_type": "type", "validated": true, "ani": 77.3147, "matched_fragments": 61, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003043925.1", "gtdb_species": "s__Prevotella sp003043925", "ani": 99.9762, "matched_fragments": 966, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000426585.1", "gtdb_species": "s__Prevotella baroniae", "ani": 84.1502, "matched_fragments": 592, "total_fragments": 981, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "98.01", 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