{ "tc_result": [ { "organism_name": "Ensifer sesbaniae", "strain": "strain=CCBAU 65729", "accession": "GCA_013283665.1", "taxid": 1214071, "species_taxid": 1214071, "relation_to_type": "type", "validated": true, "ani": 83.7361, "matched_fragments": 1458, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=USDA205", "accession": "GCA_009601405.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 81.7624, "matched_fragments": 1089, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=NBRC 14780", "accession": "GCA_006539605.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 81.7538, "matched_fragments": 1052, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium fredii", "strain": "strain=USDA 205", "accession": "GCA_001461695.1", "taxid": 380, "species_taxid": 380, "relation_to_type": "type", "validated": true, "ani": 81.6487, "matched_fragments": 1102, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium meliloti", "strain": "strain=USDA1002", "accession": "GCA_009601385.1", "taxid": 382, "species_taxid": 382, "relation_to_type": "type", "validated": true, "ani": 81.525, "matched_fragments": 1126, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium meliloti", "strain": "strain=NBRC 14782", "accession": "GCA_006539625.1", "taxid": 382, "species_taxid": 382, "relation_to_type": "type", "validated": true, "ani": 81.4664, "matched_fragments": 1075, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer psoraleae", "strain": "strain=CCBAU 65732", "accession": "GCA_013283645.1", "taxid": 520838, "species_taxid": 520838, "relation_to_type": "type", "validated": true, "ani": 81.3336, "matched_fragments": 1191, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer mexicanus", "strain": "strain=ITTG R7", "accession": "GCA_013488225.1", "taxid": 375549, "species_taxid": 375549, "relation_to_type": "type", "validated": true, "ani": 81.3239, "matched_fragments": 1170, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer mexicanus", "strain": "strain=DSM 18446", "accession": "GCA_017873105.1", "taxid": 375549, "species_taxid": 375549, "relation_to_type": "type", "validated": true, "ani": 81.2897, "matched_fragments": 1165, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 80.8853, "matched_fragments": 853, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer sojae", "strain": "strain=CCBAU 05684", "accession": "GCA_002288525.1", "taxid": 716925, "species_taxid": 716925, "relation_to_type": "type", "validated": true, "ani": 80.8632, "matched_fragments": 970, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=DSM 287", "accession": "GCA_009826855.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 80.7883, "matched_fragments": 847, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer sojae", "strain": "strain=CCBAU 05684", "accession": "GCA_000261485.1", "taxid": 716925, "species_taxid": 716925, "relation_to_type": "type", "validated": true, "ani": 80.7611, "matched_fragments": 939, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 80.7139, "matched_fragments": 835, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium kostiense", "strain": "strain=DSM 13372", "accession": "GCA_017874595.1", "taxid": 76747, "species_taxid": 76747, "relation_to_type": "type", "validated": true, "ani": 80.5243, "matched_fragments": 963, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella oryzae", "strain": "strain=Z-25", "accession": "GCA_023038235.1", "taxid": 2871820, "species_taxid": 2871820, "relation_to_type": "type", "validated": true, "ani": 80.4745, "matched_fragments": 841, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella sumterensis", "strain": "strain=MEC087", "accession": "GCA_004514425.2", "taxid": 1967501, "species_taxid": 1967501, "relation_to_type": "type", "validated": true, "ani": 80.3544, "matched_fragments": 823, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhizobium antarcticum", "strain": "strain=NAQVI 59", "accession": "GCA_001885585.1", "taxid": 1798805, "species_taxid": 1798805, "relation_to_type": "type", "validated": true, "ani": 79.8387, "matched_fragments": 841, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium pisi", "strain": "strain=DSM 30132", "accession": "GCA_003938655.1", "taxid": 574561, "species_taxid": 574561, "relation_to_type": "type", "validated": true, "ani": 79.4752, "matched_fragments": 818, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium fabae", "strain": "strain=DSM 19331", "accession": "GCA_014196235.1", "taxid": 573179, "species_taxid": 573179, "relation_to_type": "type", "validated": true, "ani": 79.4006, "matched_fragments": 807, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium fabae", "strain": "strain=CCBAU 33202", "accession": "GCA_003985135.1", "taxid": 573179, "species_taxid": 573179, "relation_to_type": "type", "validated": true, "ani": 79.3559, "matched_fragments": 805, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium alkalisoli", "strain": "strain=DSM 21826", "accession": "GCA_002968635.1", "taxid": 528178, "species_taxid": 528178, "relation_to_type": "type", "validated": true, "ani": 78.8964, "matched_fragments": 610, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium skierniewicense", "strain": "strain=Ch11", "accession": "GCA_023757665.1", "taxid": 984260, "species_taxid": 984260, "relation_to_type": "type", "validated": true, "ani": 77.8495, "matched_fragments": 383, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium skierniewicense", "strain": "strain=DSM 26438", "accession": "GCA_014196515.1", "taxid": 984260, "species_taxid": 984260, "relation_to_type": "type", "validated": true, "ani": 77.7829, "matched_fragments": 387, "total_fragments": 2695, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000583045.1", "gtdb_species": "s__Ensifer adhaerens_A", "ani": 98.6483, "matched_fragments": 2214, "total_fragments": 2695, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 14, "status": "conclusive" }, { "accession": "GCF_001695855.1", "gtdb_species": "s__Ensifer sp001695855", "ani": 90.3543, "matched_fragments": 1778, "total_fragments": 2695, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001270265.1", "gtdb_species": "s__Ensifer adhaerens_B", "ani": 90.2346, "matched_fragments": 1890, "total_fragments": 2695, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002002725.1", "gtdb_species": "s__Ensifer sp002002725", "ani": 89.1274, "matched_fragments": 1805, "total_fragments": 2695, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013371465.1", "gtdb_species": "s__Ensifer sp013371465", "ani": 88.7611, "matched_fragments": 1795, "total_fragments": 2695, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013283195.1", "gtdb_species": "s__Ensifer adhaerens_G", "ani": 88.613, "matched_fragments": 1807, "total_fragments": 2695, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900469625.1", "gtdb_species": "s__Ensifer sp900469625", "ani": 87.4854, "matched_fragments": 1685, "total_fragments": 2695, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Ensifer", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" } ] }