{
    "type": "genome",
    "identifier": "GCF_017498485.1",
    "organism": "Polaribacter batillariae",
    "title": "Polaribacter batillariae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Kyung Hee university",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017498485.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17673852",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2808900",
        "species_taxid": "2808900",
        "organism_name": "Polaribacter batillariae",
        "infraspecific_name": "strain=G4M1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/21",
        "asm_name": "ASM1749848v1",
        "asm_submitter": "Kyung Hee university",
        "gbrs_paired_asm": "GCA_017498485.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/498/485/GCF_017498485.1_ASM1749848v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3890129",
        "genome_size_ungapped": "3890129",
        "gc_percent": "31.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017498485.1-RS_2024_07_25",
        "annotation_date": "2024-07-25",
        "total_gene_count": "3443",
        "protein_coding_gene_count": "3318",
        "non_coding_gene_count": "47",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-21",
    "dateModified": "2021-03-21",
    "datePublished": "2021-03-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Polaribacter batillariae"
        ],
        "sample_taxid": [
            "2808900"
        ],
        "sample_host_organism": [
            "Batillaria multiformis"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.055 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3890129",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3890129",
        "N50 (bp)": "3890129",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "31.0",
        "Number of CDSs": "3432",
        "Average Protein Length": "332.2",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "37",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Polaribacter batillariae",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            {
                "organism_name": "Polaribacter cellanae",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9524,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "ani_threshold": 95,
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            },
            {
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                "matched_fragments": 882,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter aestuariivivens",
                "strain": "strain=DBTF-3",
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                "species_taxid": 2304626,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 771,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter pectinis",
                "strain": "strain=L12M9",
                "accession": "GCA_014352875.1",
                "taxid": 2738844,
                "species_taxid": 2738844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5656,
                "matched_fragments": 760,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter vadi",
                "strain": "strain=LPB0003",
                "accession": "GCA_001761365.1",
                "taxid": 1774273,
                "species_taxid": 1774273,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3887,
                "matched_fragments": 646,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter undariae",
                "strain": "strain=KCTC 42175",
                "accession": "GCA_024918935.1",
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                "species_taxid": 1574269,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9596,
                "matched_fragments": 591,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter dokdonensis",
                "strain": "strain=KCTC 12392",
                "accession": "GCA_024362345.1",
                "taxid": 326329,
                "species_taxid": 326329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0761,
                "matched_fragments": 543,
                "total_fragments": 1296,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017498485.1",
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                "matched_fragments": 1295,
                "total_fragments": 1296,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter",
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                "num_clustered_genomes": 2,
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                "accession": "GCF_000766795.1",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "batillariae"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}