{ "type": "genome", "identifier": "GCF_017565645.3", "organism": "Bradyrhizobium barranii subsp. barranii", "title": "Bradyrhizobium barranii subsp. barranii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Agriculture and Agri-Food Canada", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017565645.3", "bioproject": "PRJNA224116", "biosample": "SAMN18312838", "wgs_master": "na", "refseq_category": "na", "taxid": "2823807", "species_taxid": "2992140", "organism_name": "Bradyrhizobium barranii subsp. barranii", "infraspecific_name": "strain=144S4", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/09", "asm_name": "ASM1756564v3", "asm_submitter": "Agriculture and Agri-Food Canada", "gbrs_paired_asm": "GCA_017565645.3", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/565/645/GCF_017565645.3_ASM1756564v3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "11399526", "genome_size_ungapped": "11399526", "gc_percent": "63.000000", "replicon_count": "4", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017565645.3-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "11104", "protein_coding_gene_count": "10267", "non_coding_gene_count": "80", "pubmed_id": "36260659" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-09", "dateModified": "2021-11-09", "datePublished": "2021-11-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium barranii subsp. barranii" ], "sample_taxid": [ "2823807" ], "sample_host_organism": [ "Glycine max cv. AC Orford" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Quebec, Quebec" ], "sample_host_location_id": [], "data_size": "3.147 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "11399526", "Number of Sequences": "4", "Longest Sequences (bp)": "10692809", "N50 (bp)": "10692809", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.1", "Number of CDSs": "11243", "Average Protein Length": "280.9", "Coding Ratio (%)": "83.1", "Number of rRNAs": "6", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=USDA 6", "accession": "GCA_000284375.1", "taxid": 375, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 88.8948, "matched_fragments": 2094, "total_fragments": 3797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium shewense", "strain": "strain=ERR11", "accession": "GCA_900094605.1", "taxid": 1761772, "species_taxid": 1761772, "relation_to_type": "type", "validated": true, "ani": 88.747, "matched_fragments": 2115, "total_fragments": 3797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nitroreducens", "strain": "strain=TSA1", "accession": "GCA_002776695.1", "taxid": 709803, "species_taxid": 709803, "relation_to_type": "type", "validated": true, "ani": 88.6682, "matched_fragments": 1949, "total_fragments": 3797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium forestalis", "strain": "strain=INPA54B", "accession": "GCA_002795245.1", "taxid": 1419263, "species_taxid": 1419263, "relation_to_type": "type", "validated": true, "ani": 88.466, "matched_fragments": 1998, "total_fragments": 3797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium rifense", "strain": "strain=CTAW71", "accession": "GCA_008123425.1", "taxid": 515499, "species_taxid": 515499, "relation_to_type": "type", "validated": true, "ani": 88.2088, "matched_fragments": 2109, "total_fragments": 3797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 82.9241, "matched_fragments": 1631, "total_fragments": 3797, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", 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