{ "type": "genome", "identifier": "GCF_017565705.1", "organism": "Leucobacter ruminantium", "title": "Leucobacter ruminantium", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sichuan university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017565705.1", "bioproject": "PRJNA224116", "biosample": "SAMN18316937", "wgs_master": "JAGDYL000000000.1", "refseq_category": "reference genome", "taxid": "1289170", "species_taxid": "1289170", "organism_name": "Leucobacter ruminantium", "infraspecific_name": "strain=A2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/22", "asm_name": "ASM1756570v1", "asm_submitter": "Sichuan university", "gbrs_paired_asm": "GCA_017565705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/565/705/GCF_017565705.1_ASM1756570v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3305448", "genome_size_ungapped": "3305448", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "69", "contig_count": "69", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017565705.1-RS_2024_04_19", "annotation_date": "2024-04-19", "total_gene_count": "3084", "protein_coding_gene_count": "2970", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-22", "dateModified": "2021-03-22", "datePublished": "2021-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter ruminantium" ], "sample_taxid": [ "1289170" ], "sample_host_organism": [ "bovine" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.893 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3305448", "Number of Sequences": "69", "Longest Sequences (bp)": "437666", "N50 (bp)": "102399", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.4", "Number of CDSs": "3035", "Average Protein Length": "327.9", "Coding Ratio (%)": "90.3", "Number of rRNAs": "4", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter ruminantium", "strain": "strain=A2", "accession": "GCA_017565705.1", "taxid": 1289170, "species_taxid": 1289170, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1068, "total_fragments": 1072, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Leucobacter muris", "strain": "strain=DSM 101948", "accession": "GCA_004028235.1", "taxid": 1935379, "species_taxid": 1935379, "relation_to_type": "type", "validated": true, "ani": 83.3141, "matched_fragments": 590, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chironomi", "strain": "strain=DSM 19883", "accession": "GCA_000421845.1", "taxid": 491918, "species_taxid": 491918, "relation_to_type": "type", "validated": true, "ani": 82.8962, "matched_fragments": 565, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter celer subsp. astrifaciens", "strain": "strain=CBX151", "accession": "GCA_001273835.1", "taxid": 1461260, "species_taxid": 668625, "relation_to_type": "type", "validated": true, "ani": 82.7426, "matched_fragments": 610, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter zeae", "strain": "strain=CC-MF41", "accession": "GCA_016758175.1", "taxid": 1257004, "species_taxid": 1257004, "relation_to_type": "type", "validated": true, "ani": 82.0299, "matched_fragments": 583, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter massiliensis", "strain": "strain=122RC15", "accession": "GCA_002982315.1", "taxid": 1686285, "species_taxid": 1686285, "relation_to_type": "type", "validated": true, "ani": 81.981, "matched_fragments": 514, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiiresistens", "strain": "strain=DSM 22788", "accession": "GCA_900102345.1", "taxid": 1079994, "species_taxid": 1079994, "relation_to_type": "type", "validated": true, "ani": 81.8426, "matched_fragments": 523, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiisoli", "strain": "strain=CSA1", "accession": "GCA_016522505.1", "taxid": 2796471, "species_taxid": 2796471, "relation_to_type": "type", "validated": true, "ani": 81.8401, "matched_fragments": 572, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiiresistens", "strain": "strain=JG 31", "accession": "GCA_000231305.1", "taxid": 1079994, "species_taxid": 1079994, "relation_to_type": "type", "validated": true, "ani": 81.8301, "matched_fragments": 512, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter soli", "strain": "strain=CIP 111803", "accession": "GCA_910593785.1", "taxid": 2812850, "species_taxid": 2812850, "relation_to_type": "type", "validated": true, "ani": 81.2689, "matched_fragments": 433, "total_fragments": 1072, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.77", "min_intra_species_ani": "98.77", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000421845.1", "gtdb_species": "s__Leucobacter chironomi", "ani": 82.911, "matched_fragments": 564, "total_fragments": 1072, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leucobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001273835.1", "gtdb_species": "s__Leucobacter celer", "ani": 82.7374, "matched_fragments": 610, "total_fragments": 1072, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leucobacter", "ani_circumscription_radius": 95.0, 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