{
    "type": "genome",
    "identifier": "GCF_017573465.1",
    "organism": "Actinomadura violacea",
    "title": "Actinomadura violacea",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chulalongkorn University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017573465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18346135",
        "wgs_master": "JAGEPF000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2819934",
        "species_taxid": "2819934",
        "organism_name": "Actinomadura violacea",
        "infraspecific_name": "strain=LCR2-06",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/23",
        "asm_name": "ASM1757346v1",
        "asm_submitter": "Chulalongkorn University",
        "gbrs_paired_asm": "GCA_017573465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/573/465/GCF_017573465.1_ASM1757346v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "11174601",
        "genome_size_ungapped": "11174601",
        "gc_percent": "72.500000",
        "replicon_count": "0",
        "scaffold_count": "74",
        "contig_count": "74",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017573465.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "10596",
        "protein_coding_gene_count": "10391",
        "non_coding_gene_count": "108",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-23",
    "dateModified": "2021-03-23",
    "datePublished": "2021-03-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomadura violacea"
        ],
        "sample_taxid": [
            "2819934"
        ],
        "sample_host_organism": [
            "Parmotrema sp."
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Thailand"
        ],
        "sample_host_location_id": [],
        "data_size": "2.966 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 12.5,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "11174601",
        "Number of Sequences": "74",
        "Longest Sequences (bp)": "459953",
        "N50 (bp)": "266773",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "72.7",
        "Number of CDSs": "10582",
        "Average Protein Length": "315.9",
        "Coding Ratio (%)": "89.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "128",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Actinomadura violacea",
                "strain": "strain=LCR2-06",
                "accession": "GCA_017573465.1",
                "taxid": 2819934,
                "species_taxid": 2819934,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 3684,
                "total_fragments": 3689,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Actinomadura montaniterrae",
                "strain": "strain=CYP1-1B",
                "accession": "GCA_008923365.1",
                "taxid": 1803903,
                "species_taxid": 1803903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.1161,
                "matched_fragments": 2508,
                "total_fragments": 3689,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura nitritigenes",
                "strain": "strain=L46",
                "accession": "GCA_017573545.1",
                "taxid": 134602,
                "species_taxid": 134602,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.8091,
                "matched_fragments": 2677,
                "total_fragments": 3689,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura physcomitrii",
                "strain": "strain=LD22",
                "accession": "GCA_008923205.2",
                "taxid": 2650748,
                "species_taxid": 2650748,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.201,
                "matched_fragments": 2312,
                "total_fragments": 3689,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura bangladeshensis",
                "strain": "strain=DSM 45347",
                "accession": "GCA_004348335.1",
                "taxid": 453573,
                "species_taxid": 453573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9341,
                "matched_fragments": 1802,
                "total_fragments": 3689,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura meyerae",
                "strain": "strain=DSM 44715",
                "accession": "GCA_900188445.1",
                "taxid": 240840,
                "species_taxid": 240840,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8763,
                "matched_fragments": 2011,
                "total_fragments": 3689,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura geliboluensis",
                "strain": "strain=A8036",
                "accession": "GCA_005889745.1",
                "taxid": 882440,
                "species_taxid": 882440,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8441,
                "matched_fragments": 1785,
                "total_fragments": 3689,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura citrea",
                "strain": "strain=DSM 43461",
                "accession": "GCA_013409045.1",
                "taxid": 46158,
                "species_taxid": 46158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5636,
                "matched_fragments": 2119,
                "total_fragments": 3689,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura graeca",
                "strain": "strain=32-07",
                "accession": "GCA_019175365.1",
                "taxid": 2750812,
                "species_taxid": 2750812,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.666,
                "matched_fragments": 1761,
                "total_fragments": 3689,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura roseirufa",
                "strain": "",
                "accession": "GCA_900659635.1",
                "taxid": 2094049,
                "species_taxid": 2094049,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3698,
                "matched_fragments": 1629,
                "total_fragments": 3689,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura spongiicola",
                "strain": "strain=LHW52907",
                "accession": "GCA_003432485.1",
                "taxid": 2303421,
                "species_taxid": 2303421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9426,
                "matched_fragments": 1588,
                "total_fragments": 3689,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura parmotrematis",
                "strain": "strain=PM05-2",
                "accession": "GCA_019458805.1",
                "taxid": 2864039,
                "species_taxid": 2864039,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8647,
                "matched_fragments": 1754,
                "total_fragments": 3689,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomadura rupiterrae",
                "strain": "strain=DSM 45251",
                "accession": "GCA_024172125.1",
                "taxid": 559627,
                "species_taxid": 559627,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3172,
                "matched_fragments": 1808,
                "total_fragments": 3689,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 12.5,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_013211575.1",
                "gtdb_species": "s__Spirillospora verrucosospora",
                "ani": 95.8265,
                "matched_fragments": 3032,
                "total_fragments": 3689,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.82",
                "min_intra_species_ani": "95.82",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_008923365.1",
                "gtdb_species": "s__Spirillospora montaniterrae",
                "ani": 92.1333,
                "matched_fragments": 2504,
                "total_fragments": 3689,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017573545.1",
                "gtdb_species": "s__Spirillospora nitritigenes",
                "ani": 91.8322,
                "matched_fragments": 2674,
                "total_fragments": 3689,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.12",
                "min_intra_species_ani": "95.12",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008923205.2",
                "gtdb_species": "s__Spirillospora physcomitrii",
                "ani": 91.2138,
                "matched_fragments": 2312,
                "total_fragments": 3689,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004348335.1",
                "gtdb_species": "s__Spirillospora bangladeshensis",
                "ani": 84.9775,
                "matched_fragments": 1794,
                "total_fragments": 3689,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013372625.1",
                "gtdb_species": "s__Spirillospora sp013372625",
                "ani": 84.9406,
                "matched_fragments": 1664,
                "total_fragments": 3689,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900188445.1",
                "gtdb_species": "s__Spirillospora meyerae",
                "ani": 84.8588,
                "matched_fragments": 2014,
                "total_fragments": 3689,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900188105.1",
                "gtdb_species": "s__Spirillospora mexicana",
                "ani": 84.5631,
                "matched_fragments": 1978,
                "total_fragments": 3689,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008327685.1",
                "gtdb_species": "s__Spirillospora sp008327685",
                "ani": 84.5564,
                "matched_fragments": 2116,
                "total_fragments": 3689,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004348535.1",
                "gtdb_species": "s__Spirillospora sp004348535",
                "ani": 83.8483,
                "matched_fragments": 1633,
                "total_fragments": 3689,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900659635.1",
                "gtdb_species": "s__Spirillospora roseirufa",
                "ani": 83.3621,
                "matched_fragments": 1631,
                "total_fragments": 3689,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.301,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 30.967,
        "optimum_tmp": 32.909,
        "optimum_ph": 7.142,
        "genome_size": 8227448.539,
        "gc_content": 72.459,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.833,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.666,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.333,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Actinomadura",
        "violacea"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}