{ "type": "genome", "identifier": "GCF_017583045.1", "organism": "Leucobacter tardus", "title": "Leucobacter tardus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sichuan university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017583045.1", "bioproject": "PRJNA224116", "biosample": "SAMN18316775", "wgs_master": "JAGFBF000000000.1", "refseq_category": "reference genome", "taxid": "501483", "species_taxid": "501483", "organism_name": "Leucobacter tardus", "infraspecific_name": "strain=K 70/01", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/24", "asm_name": "ASM1758304v1", "asm_submitter": "Sichuan university", "gbrs_paired_asm": "GCA_017583045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/583/045/GCF_017583045.1_ASM1758304v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2951011", "genome_size_ungapped": "2951011", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-08-30", "total_gene_count": "2777", "protein_coding_gene_count": "2713", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-24", "dateModified": "2021-03-24", "datePublished": "2021-03-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter tardus" ], "sample_taxid": [ "501483" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.800 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2951011", "Number of Sequences": "7", "Longest Sequences (bp)": "1280327", "N50 (bp)": "972079", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.0", "Number of CDSs": "2747", "Average Protein Length": "333.2", "Coding Ratio (%)": "93.0", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter tardus", "strain": "strain=K 70/01", "accession": "GCA_017583045.1", "taxid": 501483, "species_taxid": 501483, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 979, "total_fragments": 981, "ani_threshold": 95, "status": 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chromiisoli", "strain": "strain=CSA1", "accession": "GCA_016522505.1", "taxid": 2796471, "species_taxid": 2796471, "relation_to_type": "type", "validated": true, "ani": 79.804, "matched_fragments": 436, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter muris", "strain": "strain=DSM 101948", "accession": "GCA_004028235.1", "taxid": 1935379, "species_taxid": 1935379, "relation_to_type": "type", "validated": true, "ani": 79.7681, "matched_fragments": 431, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chironomi", "strain": "strain=DSM 19883", "accession": "GCA_000421845.1", "taxid": 491918, "species_taxid": 491918, "relation_to_type": "type", "validated": true, "ani": 79.7673, "matched_fragments": 402, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter triazinivorans", "strain": "strain=JW-1", "accession": "GCA_004208635.1", "taxid": 1784719, "species_taxid": 1784719, "relation_to_type": "type", "validated": true, "ani": 79.5512, "matched_fragments": 421, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter massiliensis", "strain": "strain=122RC15", "accession": "GCA_002982315.1", "taxid": 1686285, "species_taxid": 1686285, "relation_to_type": "type", "validated": true, "ani": 79.4936, "matched_fragments": 391, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter soli", "strain": "strain=CIP 111803", "accession": "GCA_910593785.1", "taxid": 2812850, "species_taxid": 2812850, "relation_to_type": "type", "validated": true, "ani": 79.415, "matched_fragments": 350, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter celer subsp. astrifaciens", "strain": "strain=CBX151", "accession": "GCA_001273835.1", "taxid": 1461260, 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