{ "type": "genome", "identifier": "GCF_017589465.1", "organism": "Pseudomonas schmalbachii", "title": "Pseudomonas schmalbachii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Taiwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017589465.1", "bioproject": "PRJNA224116", "biosample": "SAMN17134837", "wgs_master": "JAELYA000000000.1", "refseq_category": "reference genome", "taxid": "2816993", "species_taxid": "2816993", "organism_name": "Pseudomonas schmalbachii", "infraspecific_name": "strain=Milli4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/26", "asm_name": "ASM1758946v1", "asm_submitter": "National Taiwan University", "gbrs_paired_asm": "GCA_017589465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/589/465/GCF_017589465.1_ASM1758946v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5472909", "genome_size_ungapped": "5472909", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017589465.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4889", "protein_coding_gene_count": "4732", "non_coding_gene_count": "89", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-26", "dateModified": "2021-03-26", "datePublished": "2021-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas schmalbachii" ], "sample_taxid": [ "2816993" ], "sample_host_organism": [ "Trigoniulus corallinus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan: Pingtung, Xinyuan" ], "sample_host_location_id": [], "data_size": "1.501 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5472909", "Number of Sequences": "49", "Longest Sequences (bp)": "1237363", "N50 (bp)": "523132", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.9", "Number of CDSs": "4790", "Average Protein Length": "335.6", "Coding Ratio (%)": "88.1", "Number of rRNAs": "2", "Number of tRNAs": "67", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas jinjuensis", "strain": "strain=JCM 21621", "accession": "GCA_900103845.1", "taxid": 198616, "species_taxid": 198616, "relation_to_type": "type", "validated": true, 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"status": "below_threshold" }, { "organism_name": "Pseudomonas knackmussii", "strain": "strain=B13", "accession": "GCA_000689415.1", "taxid": 65741, "species_taxid": 65741, "relation_to_type": "type", "validated": true, "ani": 85.6948, "matched_fragments": 1204, "total_fragments": 1811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas panipatensis", "strain": "strain=CCM 7469", "accession": "GCA_900099785.1", "taxid": 428992, "species_taxid": 428992, "relation_to_type": "type", "validated": true, "ani": 85.6543, "matched_fragments": 1120, "total_fragments": 1811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tohonis", "strain": "strain=TUM18999", "accession": "GCA_012767755.2", "taxid": 2725477, "species_taxid": 2725477, "relation_to_type": "type", "validated": true, "ani": 83.244, "matched_fragments": 1069, "total_fragments": 1811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 83.1606, "matched_fragments": 1008, "total_fragments": 1811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 83.1515, "matched_fragments": 991, "total_fragments": 1811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 82.8604, "matched_fragments": 892, "total_fragments": 1811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas aromaticivorans", "strain": "strain=MAP12", 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