{ "type": "genome", "identifier": "GCF_017592335.1", "organism": "Pseudaestuariivita rosea", "title": "Pseudaestuariivita rosea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Univesity", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017592335.1", "bioproject": "PRJNA224116", "biosample": "SAMN15831211", "wgs_master": "JACNMP000000000.1", "refseq_category": "reference genome", "taxid": "2763263", "species_taxid": "2763263", "organism_name": "Pseudaestuariivita rosea", "infraspecific_name": "strain=H15", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/26", "asm_name": "ASM1759233v1", "asm_submitter": "Shandong Univesity", "gbrs_paired_asm": "GCA_017592335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/592/335/GCF_017592335.1_ASM1759233v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3893358", "genome_size_ungapped": "3893358", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "87", "contig_count": "87", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017592335.1-RS_2024_03_13", "annotation_date": "2024-03-13", "total_gene_count": "3983", "protein_coding_gene_count": "3825", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-26", "dateModified": "2021-03-26", "datePublished": "2021-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudaestuariivita rosea" ], "sample_taxid": [ "2763263" ], "sample_host_organism": [ "Nipponacmea schrenckii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Weihai" ], "sample_host_location_id": [], "data_size": "1.105 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3893358", "Number of Sequences": "87", "Longest Sequences (bp)": "323676", "N50 (bp)": "114996", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.1", "Number of CDSs": "3929", "Average Protein Length": "293.5", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseovarius bejariae", "strain": "strain=A21", "accession": "GCA_009669325.1", "taxid": 2576383, "species_taxid": 2576383, "relation_to_type": "type", "validated": true, "ani": 77.4559, "matched_fragments": 185, 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"status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=DSM 29589", "accession": "GCA_900142665.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 77.2614, "matched_fragments": 227, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=CGMCC 1.7083", "accession": "GCA_014645335.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 77.1968, "matched_fragments": 223, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1824, "matched_fragments": 235, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=H3", "accession": "GCA_000712315.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.1766, "matched_fragments": 234, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=DSM 27767", "accession": "GCA_002797755.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 77.1584, "matched_fragments": 170, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudosulfitobacter pseudonitzschiae", "strain": "strain=DSM 26824", "accession": "GCA_900129395.1", "taxid": 1402135, "species_taxid": 1402135, "relation_to_type": "type", "validated": true, "ani": 77.1132, "matched_fragments": 226, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_900112725.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 77.1059, "matched_fragments": 172, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 77.0999, "matched_fragments": 217, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=B108", "accession": "GCA_001441635.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 77.0784, "matched_fragments": 175, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius aquimarinus", "strain": "strain=KMM 8518", "accession": "GCA_018219815.1", "taxid": 2785917, "species_taxid": 2785917, "relation_to_type": "type", "validated": true, "ani": 77.0694, "matched_fragments": 213, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 77.0589, "matched_fragments": 171, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nitratireducens", "strain": "strain=DSM 29619", "accession": "GCA_900112545.1", "taxid": 517719, "species_taxid": 517719, "relation_to_type": "type", "validated": true, "ani": 77.0365, "matched_fragments": 234, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=22DY15", "accession": "GCA_002094875.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 77.0346, "matched_fragments": 164, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria conchae", "strain": "strain=DSM 29317", "accession": "GCA_003664205.1", "taxid": 981384, "species_taxid": 981384, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0103, "matched_fragments": 153, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nitratireducens", "strain": "strain=CGMCC 1.7292", "accession": "GCA_900109195.1", "taxid": 517719, "species_taxid": 517719, "relation_to_type": "type", "validated": true, "ani": 77.0097, "matched_fragments": 231, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius albus", "strain": "strain=CECT 7450", "accession": "GCA_900172335.1", "taxid": 1247867, "species_taxid": 1247867, "relation_to_type": "type", "validated": true, "ani": 77.0067, "matched_fragments": 136, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter delicatus", "strain": "strain=DSM 16477", "accession": "GCA_900102535.1", "taxid": 218672, "species_taxid": 218672, "relation_to_type": "type", "validated": true, "ani": 76.9798, "matched_fragments": 174, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria conchae", "strain": "strain=TW15", "accession": "GCA_000192475.2", "taxid": 981384, "species_taxid": 981384, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9684, "matched_fragments": 153, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 76.9292, "matched_fragments": 190, 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"below_threshold" }, { "organism_name": "Pseudodonghicola xiamenensis", "strain": "strain=DSM 18339", "accession": "GCA_000429365.1", "taxid": 337702, "species_taxid": 337702, "relation_to_type": "type", "validated": true, "ani": 76.8536, "matched_fragments": 177, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 76.7865, "matched_fragments": 180, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria profundi", "strain": "strain=ZGT108", "accession": "GCA_001507545.1", "taxid": 1685378, "species_taxid": 1685378, "relation_to_type": "type", "validated": true, "ani": 76.783, "matched_fragments": 160, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum 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"GCA_009753675.1", "taxid": 2682100, "species_taxid": 2682100, "relation_to_type": "type", "validated": true, "ani": 76.3738, "matched_fragments": 117, "total_fragments": 1253, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_017592335.1", "gtdb_species": "s__Sulfitobacter_F sp017592335", "ani": 100.0, "matched_fragments": 1247, "total_fragments": 1253, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Sulfitobacter_F", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013315265.1", "gtdb_species": "s__Sulfitobacter_F algicola", "ani": 82.1115, "matched_fragments": 445, "total_fragments": 1253, 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