{ "type": "genome", "identifier": "GCF_017592555.1", "organism": "Actinoplanes flavus", "title": "Actinoplanes flavus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "School of life science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017592555.1", "bioproject": "PRJNA224116", "biosample": "SAMN18355478", "wgs_master": "JAGFNS000000000.1", "refseq_category": "reference genome", "taxid": "2820290", "species_taxid": "2820290", "organism_name": "Actinoplanes flavus", "infraspecific_name": "strain=NEAU-H7", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/27", "asm_name": "ASM1759255v1", "asm_submitter": "School of life science", "gbrs_paired_asm": "GCA_017592555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/592/555/GCF_017592555.1_ASM1759255v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9683788", "genome_size_ungapped": "9683418", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "96", "contig_count": "96", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017592555.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "8828", "protein_coding_gene_count": "8598", "non_coding_gene_count": "98", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-27", "dateModified": "2021-03-27", "datePublished": "2021-03-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinoplanes flavus" ], "sample_taxid": [ "2820290" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Hainan" ], "sample_host_location_id": [], "data_size": "2.593 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9683788", "Number of Sequences": "96", "Longest Sequences (bp)": "672595", "N50 (bp)": "239074", "Gap Ratio (%)": "0.003821", "GCcontent (%)": "71.2", "Number of CDSs": "8819", "Average Protein Length": "329.0", "Coding Ratio (%)": "89.9", "Number of rRNAs": "4", "Number of tRNAs": "98", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinoplanes flavus", "strain": "strain=NEAU-H7", "accession": "GCA_017592555.1", "taxid": 2820290, "species_taxid": 2820290, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3169, "total_fragments": 3184, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinoplanes campanulatus", "strain": "strain=NBRC 12511", "accession": "GCA_016862035.1", "taxid": 113559, "species_taxid": 113559, "relation_to_type": "type", "validated": true, "ani": 93.9882, "matched_fragments": 2657, "total_fragments": 3184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes hulinensis", "strain": "strain=NEAU-M9", "accession": "GCA_019429605.1", "taxid": 1144547, "species_taxid": 1144547, "relation_to_type": "type", "validated": true, "ani": 93.9812, "matched_fragments": 2606, "total_fragments": 3184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes campanulatus", "strain": "strain=JCM 3059", "accession": "GCA_014647795.1", "taxid": 113559, "species_taxid": 113559, "relation_to_type": "type", "validated": true, "ani": 93.9635, "matched_fragments": 2702, "total_fragments": 3184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes capillaceus", "strain": "strain=NBRC 16408", "accession": "GCA_016862055.1", "taxid": 76756, "species_taxid": 76756, "relation_to_type": "type", "validated": true, "ani": 93.8624, "matched_fragments": 2586, "total_fragments": 3184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lobatus", "strain": "strain=JCM 3061", "accession": "GCA_014647815.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 93.789, "matched_fragments": 2631, "total_fragments": 3184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lobatus", "strain": "strain=NBRC 12513", "accession": "GCA_016862255.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 93.762, "matched_fragments": 2575, "total_fragments": 3184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lobatus", "strain": "strain=DSM 43150", "accession": "GCA_014205215.1", "taxid": 113568, "species_taxid": 113568, "relation_to_type": "type", "validated": true, "ani": 93.7387, "matched_fragments": 2654, "total_fragments": 3184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 79.1419, "matched_fragments": 835, "total_fragments": 3184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 78.8818, "matched_fragments": 974, "total_fragments": 3184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium fulvum", "strain": "strain=NRRL B-16292", "accession": "GCA_025137375.1", "taxid": 53359, "species_taxid": 53359, "relation_to_type": "type", "validated": true, "ani": 77.2946, "matched_fragments": 1101, "total_fragments": 3184, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium matsuzakiense", "strain": "strain=NRRL B-16293", "accession": "GCA_025264725.1", "taxid": 53360, "species_taxid": 53360, "relation_to_type": "type", "validated": true, "ani": 77.1553, "matched_fragments": 1231, "total_fragments": 3184, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017592555.1", "gtdb_species": "s__Actinoplanes sp017592555", "ani": 100.0, "matched_fragments": 3170, "total_fragments": 3184, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_014647795.1", "gtdb_species": "s__Actinoplanes campanulatus", "ani": 93.9691, "matched_fragments": 2701, "total_fragments": 3184, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0428, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "96.79", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_014205215.1", "gtdb_species": "s__Actinoplanes lobatus", "ani": 93.7309, "matched_fragments": 2655, "total_fragments": 3184, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0428, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_016862455.1", "gtdb_species": "s__Actinoplanes utahensis", "ani": 85.0998, "matched_fragments": 1995, "total_fragments": 3184, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900113015.1", "gtdb_species": "s__Actinoplanes philippinensis", "ani": 85.0026, "matched_fragments": 2099, "total_fragments": 3184, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", 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"min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016862395.1", "gtdb_species": "s__Actinoplanes siamensis", "ani": 82.7671, "matched_fragments": 1573, "total_fragments": 3184, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018324205.1", "gtdb_species": "s__Actinoplanes ianthinogenes", "ani": 82.7342, "matched_fragments": 1853, "total_fragments": 3184, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Actinoplanes", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.088, "cell_length": 0.194, "doubling_h": null, "growth_tmp": 27.761, "optimum_tmp": 27.203, "optimum_ph": 7.5, "genome_size": 10220628.9, "gc_content": 70.815, "coding_genes": 8199.833, "rRNA16S_genes": 4.5, "tRNA_genes": 63.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.857, "range_salinity": 0.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.666, "coccobacillus_cell_shape": 0.333, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinoplanes", "flavus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }