{ "type": "genome", "identifier": "GCF_017776525.1", "organism": "Marinobacterium alkalitolerans", "title": "Marinobacterium alkalitolerans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CSIR-National Institute of Oceanography", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017776525.1", "bioproject": "PRJNA224116", "biosample": "SAMN15871874", "wgs_master": "JACVEW000000000.1", "refseq_category": "reference genome", "taxid": "1542925", "species_taxid": "1542925", "organism_name": "Marinobacterium alkalitolerans", "infraspecific_name": "strain=AK62", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/05", "asm_name": "ASM1777652v1", "asm_submitter": "CSIR-National Institute of Oceanography", "gbrs_paired_asm": "GCA_017776525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/776/525/GCF_017776525.1_ASM1777652v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3335703", "genome_size_ungapped": "3335703", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017776525.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3203", "protein_coding_gene_count": "3123", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-05", "dateModified": "2021-04-05", "datePublished": "2021-04-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacterium alkalitolerans" ], "sample_taxid": [ "1542925" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Kakinada, Andhra Pradesh" ], "sample_host_location_id": [], "data_size": "0.949 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3335703", "Number of Sequences": "49", "Longest Sequences (bp)": "261172", "N50 (bp)": "125046", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.2", "Number of CDSs": "3136", "Average Protein Length": "326.5", "Coding Ratio (%)": "92.1", "Number of rRNAs": "2", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacterium alkalitolerans", "strain": "strain=AK62", "accession": "GCA_017776525.1", "taxid": 1542925, "species_taxid": 1542925, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1085, "total_fragments": 1088, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacterium stanieri", "strain": "strain=DSM 7027", "accession": "GCA_900155945.1", "taxid": 49186, "species_taxid": 49186, "relation_to_type": "type", "validated": true, "ani": 81.6506, "matched_fragments": 711, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium halophilum", "strain": "strain=DSM 17586", "accession": "GCA_003014615.1", "taxid": 267374, "species_taxid": 267374, "relation_to_type": "type", "validated": true, "ani": 80.2007, "matched_fragments": 540, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium georgiense", "strain": "strain=DSM 11526", "accession": "GCA_900107855.1", "taxid": 48076, "species_taxid": 48076, "relation_to_type": "type", "validated": true, "ani": 80.0426, "matched_fragments": 459, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium mangrovicola", "strain": "strain=DSM 27697", "accession": "GCA_004339595.1", "taxid": 1476959, "species_taxid": 1476959, "relation_to_type": "type", "validated": true, "ani": 78.9878, "matched_fragments": 291, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium lutimaris", "strain": "strain=DSM 22012", "accession": "GCA_900108065.1", "taxid": 568106, "species_taxid": 568106, "relation_to_type": "type", "validated": true, "ani": 78.9417, "matched_fragments": 296, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium ramblicola", "strain": "strain=D7", "accession": "GCA_019084545.1", "taxid": 2849041, "species_taxid": 2849041, "relation_to_type": "type", "validated": true, "ani": 78.9214, "matched_fragments": 336, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium zhoushanense", "strain": "strain=CGMCC 1.15341", "accession": "GCA_014641945.1", "taxid": 1679163, "species_taxid": 1679163, "relation_to_type": "type", "validated": true, "ani": 78.8394, "matched_fragments": 296, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium arenosum", "strain": "strain=CAU 1594", "accession": "GCA_019795155.1", "taxid": 2862496, "species_taxid": 2862496, "relation_to_type": "type", "validated": true, "ani": 78.5433, "matched_fragments": 288, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium rhizophilum", "strain": "strain=DSM 18822", "accession": "GCA_000378045.1", "taxid": 420402, "species_taxid": 420402, "relation_to_type": "type", "validated": true, "ani": 77.9178, "matched_fragments": 249, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium aestuarii", "strain": "strain=ST58-10", "accession": "GCA_001651805.1", "taxid": 1821621, "species_taxid": 1821621, "relation_to_type": "type", "validated": true, "ani": 77.8787, "matched_fragments": 254, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium profundum", "strain": "strain=PAMC 27536", "accession": "GCA_001528745.1", "taxid": 1714300, "species_taxid": 1714300, "relation_to_type": "type", "validated": true, "ani": 77.6622, "matched_fragments": 221, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 76.781, "matched_fragments": 128, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas composti", "strain": "strain=CCUG 59231", "accession": "GCA_900115475.1", "taxid": 658457, "species_taxid": 658457, "relation_to_type": "type", "validated": true, "ani": 76.5735, "matched_fragments": 112, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_021602585.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 76.4211, "matched_fragments": 121, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas faucium", "strain": "strain=BML-PP048", "accession": "GCA_013373935.1", "taxid": 2740518, "species_taxid": 2740518, "relation_to_type": "type", "validated": true, "ani": 76.3489, "matched_fragments": 116, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax limicola", "strain": "strain=JB21", "accession": "GCA_019931215.1", "taxid": 2874102, "species_taxid": 2874102, "relation_to_type": "type", "validated": true, "ani": 76.3062, "matched_fragments": 78, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 76.2733, "matched_fragments": 122, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamilnaduibacter salinus", "strain": "strain=Mi-7", "accession": "GCA_002287355.1", "taxid": 1484056, "species_taxid": 1484056, "relation_to_type": "type", "validated": true, "ani": 76.2162, "matched_fragments": 63, "total_fragments": 1088, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamilnaduibacter salinus", "strain": "strain=DSM 28688", 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900115475.1", "gtdb_species": "s__Pseudomonas_E composti", "ani": 76.5539, "matched_fragments": 113, "total_fragments": 1088, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.79", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.238, "cell_length": 0.19, "doubling_h": null, "growth_tmp": 26.687, "optimum_tmp": 30.407, "optimum_ph": 7.541, "genome_size": 4628608.516, "gc_content": 58.65, "coding_genes": 4429.0, "rRNA16S_genes": 6.0, "tRNA_genes": 83.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, 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