{ "type": "genome", "identifier": "GCF_017792025.1", "organism": "Sediminibacillus dalangtanensis", "title": "Sediminibacillus dalangtanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China University of Geosciences (Wuhan)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017792025.1", "bioproject": "PRJNA224116", "biosample": "SAMN10762404", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2729421", "species_taxid": "2729421", "organism_name": "Sediminibacillus dalangtanensis", "infraspecific_name": "strain=DP4-553-S", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/06", "asm_name": "ASM1779202v1", "asm_submitter": "China University of Geosciences (Wuhan)", "gbrs_paired_asm": "GCA_017792025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/792/025/GCF_017792025.1_ASM1779202v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4100703", "genome_size_ungapped": "4100703", "gc_percent": "43.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017792025.1-RS_2024_09_12", "annotation_date": "2024-09-12", "total_gene_count": "4009", "protein_coding_gene_count": "3862", "non_coding_gene_count": "101", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-06", "dateModified": "2021-04-06", "datePublished": "2021-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Sediminibacillus dalangtanensis" ], "sample_taxid": [ "2729421" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Dalangtan" ], "sample_host_location_id": [], "data_size": "1.164 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.26, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4100703", "Number of Sequences": "1", "Longest Sequences (bp)": "4100703", "N50 (bp)": "4100703", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.5", "Number of CDSs": "3946", "Average Protein Length": "282.8", "Coding Ratio (%)": "81.7", "Number of rRNAs": "27", "Number of tRNAs": "71", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sediminibacillus dalangtanensis", "strain": "strain=DP4-553-S", "accession": "GCA_017792025.1", "taxid": 2729421, "species_taxid": 2729421, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1364, "total_fragments": 1366, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sediminibacillus halophilus", "strain": "strain=CGMCC 1.6199", "accession": "GCA_900103695.1", "taxid": 482461, "species_taxid": 482461, "relation_to_type": "type", "validated": true, "ani": 90.7745, "matched_fragments": 1194, "total_fragments": 1366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacillus terrae", "strain": "strain=JSM 102062", "accession": "GCA_009602435.1", "taxid": 1562106, "species_taxid": 1562106, "relation_to_type": "type", "validated": true, "ani": 87.6511, "matched_fragments": 1158, "total_fragments": 1366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraliobacillus zengyii", "strain": "strain=X-1125", "accession": "GCA_003268595.1", "taxid": 2213194, "species_taxid": 2213194, "relation_to_type": "type", "validated": true, "ani": 80.5723, "matched_fragments": 60, "total_fragments": 1366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus salitolerans", "strain": "strain=SCU50", "accession": "GCA_009650095.1", "taxid": 2663022, "species_taxid": 2663022, "relation_to_type": "type", "validated": true, "ani": 79.674, "matched_fragments": 82, "total_fragments": 1366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacillus albus", "strain": "strain=CGMCC 1.6502", "accession": "GCA_900101125.1", "taxid": 407036, "species_taxid": 407036, "relation_to_type": "type", "validated": true, "ani": 78.7982, "matched_fragments": 403, "total_fragments": 1366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibacillus albus", "strain": "strain=DSM 23711", "accession": "GCA_016908325.1", "taxid": 1168171, "species_taxid": 1168171, "relation_to_type": "type", "validated": true, "ani": 77.5087, "matched_fragments": 101, "total_fragments": 1366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibacillus kalidii", "strain": "strain=HU2P27", "accession": "GCA_014280935.1", "taxid": 2762597, "species_taxid": 2762597, "relation_to_type": "type", "validated": true, "ani": 77.4444, "matched_fragments": 93, "total_fragments": 1366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobacillus trueperi", "strain": "strain=KCTC 3686", "accession": "GCA_003386945.1", "taxid": 156205, "species_taxid": 156205, "relation_to_type": "type", "validated": true, "ani": 77.4105, "matched_fragments": 54, "total_fragments": 1366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentibacillus halodurans", "strain": "strain=CGMCC 1.3702", "accession": "GCA_900112045.1", "taxid": 237679, "species_taxid": 237679, "relation_to_type": "type", "validated": true, "ani": 77.1436, "matched_fragments": 56, "total_fragments": 1366, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halobacillus aidingensis", "strain": "strain=CGMCC 1.3703", "accession": "GCA_900104185.1", "taxid": 240303, "species_taxid": 240303, "relation_to_type": "type", "validated": true, "ani": 76.9439, "matched_fragments": 59, "total_fragments": 1366, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 9.26, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_017792025.1", "gtdb_species": "s__Sediminibacillus sp017792025", "ani": 100.0, "matched_fragments": 1366, "total_fragments": 1366, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Sediminibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900103695.1", "gtdb_species": "s__Sediminibacillus halophilus", "ani": 90.7745, "matched_fragments": 1194, "total_fragments": 1366, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Sediminibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009602435.1", "gtdb_species": "s__Sediminibacillus terrae", "ani": 87.659, "matched_fragments": 1157, "total_fragments": 1366, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Sediminibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "99.14", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000821245.2", "gtdb_species": "s__Sediminibacillus senegalensis", "ani": 82.1514, "matched_fragments": 870, "total_fragments": 1366, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Sediminibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900101125.1", "gtdb_species": "s__Sediminibacillus albus", "ani": 78.827, "matched_fragments": 401, "total_fragments": 1366, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Sediminibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009856355.1", "gtdb_species": "s__Halobacillus litoralis_B", "ani": 77.1184, "matched_fragments": 54, "total_fragments": 1366, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "98.95", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_015905325.1", "gtdb_species": "s__Halobacillus sp015905325", "ani": 77.0971, "matched_fragments": 62, "total_fragments": 1366, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.174, "cell_length": 0.326, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 37.0, "optimum_ph": 7.5, "genome_size": 3802046.166, "gc_content": 44.0, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.5, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.5, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Sediminibacillus", "dalangtanensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }