{
    "type": "genome",
    "identifier": "GCF_017815515.1",
    "organism": "Aureimonas populi",
    "title": "Aureimonas populi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Third Institute of Oceanography, Ministry of Natural Resources",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017815515.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18559412",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1701758",
        "species_taxid": "1701758",
        "organism_name": "Aureimonas populi",
        "infraspecific_name": "strain=KCTC 42087",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/07",
        "asm_name": "ASM1781551v1",
        "asm_submitter": "Third Institute of Oceanography, Ministry of Natural Resources",
        "gbrs_paired_asm": "GCA_017815515.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/815/515/GCF_017815515.1_ASM1781551v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3822311",
        "genome_size_ungapped": "3822311",
        "gc_percent": "68.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017815515.1-RS_2024_04_29",
        "annotation_date": "2024-04-29",
        "total_gene_count": "3673",
        "protein_coding_gene_count": "3568",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-07",
    "dateModified": "2021-04-07",
    "datePublished": "2021-04-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aureimonas populi"
        ],
        "sample_taxid": [
            "1701758"
        ],
        "sample_host_organism": [
            "Populus tomentosa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.035 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3822311",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3822311",
        "N50 (bp)": "3822311",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.2",
        "Number of CDSs": "3648",
        "Average Protein Length": "319.0",
        "Coding Ratio (%)": "91.3",
        "Number of rRNAs": "6",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aureimonas populi",
                "strain": "strain=KCTC 42087",
                "accession": "GCA_017815515.1",
                "taxid": 1701758,
                "species_taxid": 1701758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1273,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aureimonas mangrovi",
                "strain": "strain=LMG 31693",
                "accession": "GCA_014058705.1",
                "taxid": 2758041,
                "species_taxid": 2758041,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5157,
                "matched_fragments": 661,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aureimonas pseudogalii",
                "strain": "strain=DSM 102238",
                "accession": "GCA_014196835.1",
                "taxid": 1744844,
                "species_taxid": 1744844,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0588,
                "matched_fragments": 593,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aureimonas flava",
                "strain": "strain=M2BS4Y-1",
                "accession": "GCA_003583935.1",
                "taxid": 2320271,
                "species_taxid": 2320271,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9541,
                "matched_fragments": 611,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aureimonas ureilytica",
                "strain": "strain=DSM 18598",
                "accession": "GCA_000382705.1",
                "taxid": 401562,
                "species_taxid": 401562,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9527,
                "matched_fragments": 590,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aureimonas ureilytica",
                "strain": "strain=NBRC 106430",
                "accession": "GCA_001463945.1",
                "taxid": 401562,
                "species_taxid": 401562,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9032,
                "matched_fragments": 596,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aureimonas phyllosphaerae",
                "strain": "strain=DSM 25024",
                "accession": "GCA_014196405.1",
                "taxid": 1166078,
                "species_taxid": 1166078,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5207,
                "matched_fragments": 558,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aurantimonas aggregata",
                "strain": "strain=KCTC 52919",
                "accession": "GCA_010500835.1",
                "taxid": 2047720,
                "species_taxid": 2047720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3904,
                "matched_fragments": 525,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aurantimonas manganoxydans",
                "strain": "strain=DSM 21871",
                "accession": "GCA_001463865.1",
                "taxid": 651183,
                "species_taxid": 651183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3086,
                "matched_fragments": 501,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aurantimonas coralicida",
                "strain": "strain=DSM 14790",
                "accession": "GCA_001463825.1",
                "taxid": 182270,
                "species_taxid": 182270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3018,
                "matched_fragments": 516,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aurantimonas manganoxydans",
                "strain": "strain=SI85-9A1",
                "accession": "GCA_000153465.1",
                "taxid": 651183,
                "species_taxid": 651183,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2597,
                "matched_fragments": 523,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aurantimonas endophytica",
                "strain": "strain=KCTC 52296",
                "accession": "GCA_024105745.1",
                "taxid": 1522175,
                "species_taxid": 1522175,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1087,
                "matched_fragments": 520,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aureimonas altamirensis",
                "strain": "strain=DSM 21988",
                "accession": "GCA_900141975.1",
                "taxid": 370622,
                "species_taxid": 370622,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8477,
                "matched_fragments": 497,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jiella sonneratiae",
                "strain": "strain=MQZ13P-4",
                "accession": "GCA_017353515.1",
                "taxid": 2816856,
                "species_taxid": 2816856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6433,
                "matched_fragments": 517,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aurantimonas marina",
                "strain": "strain=SW136",
                "accession": "GCA_017183135.1",
                "taxid": 2780508,
                "species_taxid": 2780508,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4222,
                "matched_fragments": 403,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella zoogloeoides",
                "strain": "strain=ATCC 19623",
                "accession": "GCA_020883495.1",
                "taxid": 352475,
                "species_taxid": 352475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0787,
                "matched_fragments": 392,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chelativorans intermedius",
                "strain": "strain=LMG 28482",
                "accession": "GCA_025398255.1",
                "taxid": 515947,
                "species_taxid": 515947,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9615,
                "matched_fragments": 377,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylorubrum extorquens",
                "strain": "strain=TK 0001",
                "accession": "GCA_900234795.1",
                "taxid": 408,
                "species_taxid": 408,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9371,
                "matched_fragments": 298,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium brachiatum",
                "strain": "strain=B0021",
                "accession": "GCA_020523825.1",
                "taxid": 269660,
                "species_taxid": 269660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4642,
                "matched_fragments": 302,
                "total_fragments": 1274,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017815515.1",
                "gtdb_species": "s__Aureimonas populi",
                "ani": 100.0,
                "matched_fragments": 1274,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014058705.1",
                "gtdb_species": "s__Aureimonas mangrovi",
                "ani": 81.5185,
                "matched_fragments": 659,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014196835.1",
                "gtdb_species": "s__Aureimonas pseudogalii",
                "ani": 80.0214,
                "matched_fragments": 596,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003583935.1",
                "gtdb_species": "s__Aureimonas flava",
                "ani": 79.9679,
                "matched_fragments": 608,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000382705.1",
                "gtdb_species": "s__Aureimonas ureilytica",
                "ani": 79.9095,
                "matched_fragments": 593,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001463705.1",
                "gtdb_species": "s__Aureimonas sp001463705",
                "ani": 79.6341,
                "matched_fragments": 574,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001463745.1",
                "gtdb_species": "s__Aureimonas sp001463745",
                "ani": 79.6117,
                "matched_fragments": 562,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001442755.1",
                "gtdb_species": "s__Aureimonas sp001442755",
                "ani": 79.6054,
                "matched_fragments": 605,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "96.94",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001463765.1",
                "gtdb_species": "s__Aureimonas sp001463765",
                "ani": 79.5747,
                "matched_fragments": 549,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900113065.1",
                "gtdb_species": "s__Aureimonas phyllosphaerae",
                "ani": 79.5676,
                "matched_fragments": 538,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_010500835.1",
                "gtdb_species": "s__Aurantimonas aggregata",
                "ani": 79.4096,
                "matched_fragments": 523,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aurantimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001425485.1",
                "gtdb_species": "s__Aureimonas_A sp001425485",
                "ani": 79.3914,
                "matched_fragments": 593,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009765365.1",
                "gtdb_species": "s__VTOM01 sp009765365",
                "ani": 79.3216,
                "matched_fragments": 573,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__VTOM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014643375.1",
                "gtdb_species": "s__Aureimonas_A glaciei",
                "ani": 79.1798,
                "matched_fragments": 562,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Aureimonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002700095.1",
                "gtdb_species": "s__Jiella sp002700095",
                "ani": 78.6369,
                "matched_fragments": 497,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Jiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900167365.1",
                "gtdb_species": "s__Consotaella salsifontis",
                "ani": 78.3456,
                "matched_fragments": 382,
                "total_fragments": 1274,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Consotaella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.028,
        "cell_length": 0.198,
        "doubling_h": null,
        "growth_tmp": 28.666,
        "optimum_tmp": 27.041,
        "optimum_ph": 7.25,
        "genome_size": 4442231.972,
        "gc_content": 66.24,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.666,
        "range_salinity": null,
        "facultative_respiration": 0.2,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.8,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 1.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Aureimonas",
        "populi"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}