{ "type": "genome", "identifier": "GCF_017829975.1", "organism": "Vagococcus allomyrinae", "title": "Vagococcus allomyrinae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "BioPS Co., Ltd.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017829975.1", "bioproject": "PRJNA224116", "biosample": "SAMN16992987", "wgs_master": "JAEEGA000000000.1", "refseq_category": "reference genome", "taxid": "2794353", "species_taxid": "2794353", "organism_name": "Vagococcus allomyrinae", "infraspecific_name": "strain=BWB3-3", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/07", "asm_name": "ASM1782997v1", "asm_submitter": "BioPS Co., Ltd.", "gbrs_paired_asm": "GCA_017829975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/829/975/GCF_017829975.1_ASM1782997v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5705793", "genome_size_ungapped": "5704931", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017829975.1-RS_2024_05_26", "annotation_date": "2024-05-26", "total_gene_count": "5387", "protein_coding_gene_count": "5278", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-07", "dateModified": "2021-04-07", "datePublished": "2021-04-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Vagococcus allomyrinae" ], "sample_taxid": [ "2794353" ], "sample_host_organism": [ "Trypoxylus dichotomus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": 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1883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus alishanensis", "strain": "strain=ALS3", "accession": "GCA_019218635.1", "taxid": 1303817, "species_taxid": 1303817, "relation_to_type": "type", "validated": true, "ani": 77.0622, "matched_fragments": 71, "total_fragments": 1883, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017829975.1", "gtdb_species": "s__Vagococcus_D sp017829975", "ani": 100.0, "matched_fragments": 1880, "total_fragments": 1883, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Vagococcaceae;g__Vagococcus_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003987495.1", 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