{ "type": "genome", "identifier": "GCF_017830045.1", "organism": "Enterococcus larvae", "title": "Enterococcus larvae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "BioPS Co., Ltd.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017830045.1", "bioproject": "PRJNA224116", "biosample": "SAMN16992986", "wgs_master": "JAEDXU000000000.1", "refseq_category": "reference genome", "taxid": "2794352", "species_taxid": "2794352", "organism_name": "Enterococcus larvae", "infraspecific_name": "strain=BWM-S5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/07", "asm_name": "ASM1783004v1", "asm_submitter": "BioPS Co., Ltd.", "gbrs_paired_asm": "GCA_017830045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/830/045/GCF_017830045.1_ASM1783004v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4163499", "genome_size_ungapped": "4163499", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017830045.1-RS_2024_05_26", "annotation_date": "2024-05-26", "total_gene_count": "3948", "protein_coding_gene_count": "3869", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-07", "dateModified": "2021-04-07", "datePublished": "2021-04-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterococcus larvae" ], "sample_taxid": [ "2794352" ], "sample_host_organism": [ "Trypoxylus dichotomus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju" ], "sample_host_location_id": [], "data_size": "1.178 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4163499", "Number of Sequences": "20", "Longest Sequences (bp)": "840897", "N50 (bp)": "365294", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.1", "Number of CDSs": "3908", "Average Protein Length": "302.1", "Coding Ratio (%)": "85.1", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterococcus larvae", "strain": "strain=BWM-S5", "accession": "GCA_017830045.1", "taxid": 2794352, "species_taxid": 2794352, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1375, "total_fragments": 1375, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterococcus wangshanyuanii", "strain": "strain=MN05", "accession": "GCA_002197645.1", "taxid": 2005703, "species_taxid": 2005703, "relation_to_type": "type", "validated": true, "ani": 78.2283, "matched_fragments": 201, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus wangshanyuanii", "strain": "strain=CGMCC 1.15942", "accession": "GCA_014644255.1", "taxid": 2005703, "species_taxid": 2005703, "relation_to_type": "type", "validated": true, "ani": 78.1901, "matched_fragments": 199, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus caccae", "strain": "strain=ATCC BAA-1240", "accession": "GCA_000407145.1", "taxid": 317735, "species_taxid": 317735, "relation_to_type": "type", "validated": true, "ani": 78.1379, "matched_fragments": 190, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus caccae", "strain": "strain=ATCC BAA-1240", "accession": "GCA_000394055.1", "taxid": 317735, "species_taxid": 317735, "relation_to_type": "type", "validated": true, "ani": 78.1098, "matched_fragments": 190, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus haemoperoxidus", "strain": "strain=ATCC BAA-382", "accession": "GCA_000407165.1", "taxid": 155618, "species_taxid": 155618, "relation_to_type": "type", "validated": true, "ani": 78.1089, "matched_fragments": 192, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus caccae", "strain": "strain=DSM 19114", "accession": "GCA_001885825.1", "taxid": 317735, "species_taxid": 317735, "relation_to_type": "type", "validated": true, "ani": 78.0237, "matched_fragments": 191, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus crotali", "strain": "strain=ETRF1", "accession": "GCA_000633635.1", "taxid": 1453587, "species_taxid": 1453587, "relation_to_type": "type", "validated": true, "ani": 78.018, "matched_fragments": 190, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus ureasiticus", "strain": "strain=DSM 23328", "accession": "GCA_001730285.1", "taxid": 903984, "species_taxid": 903984, "relation_to_type": "type", "validated": true, "ani": 78.0146, "matched_fragments": 179, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus moraviensis", "strain": "strain=DSM 15919", "accession": "GCA_001886065.1", "taxid": 155617, "species_taxid": 155617, "relation_to_type": "type", "validated": true, "ani": 78.007, "matched_fragments": 190, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus silesiacus", "strain": "strain=DSM 22801", "accession": "GCA_001886225.1", "taxid": 332949, "species_taxid": 332949, "relation_to_type": "type", "validated": true, "ani": 77.8156, "matched_fragments": 195, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mundtii", "strain": "strain=DSM 4838", "accession": "GCA_002813755.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 77.7964, "matched_fragments": 98, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mundtii", "strain": "strain=NBRC 100490", "accession": "GCA_007990125.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 77.7382, "matched_fragments": 93, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=ATCC 19433", "accession": "GCA_000392875.1", "taxid": 1351, "species_taxid": 1351, "relation_to_type": "type", "validated": true, "ani": 77.6393, "matched_fragments": 129, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=PartL-Efaecalis-RM8376", "accession": "GCA_022869705.1", "taxid": 1351, "species_taxid": 1351, "relation_to_type": "type", "validated": true, "ani": 77.5762, "matched_fragments": 125, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus mundtii", "strain": "strain=DSM 4838", "accession": "GCA_001886035.1", "taxid": 53346, "species_taxid": 53346, "relation_to_type": "type", "validated": true, "ani": 77.4765, "matched_fragments": 94, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=NBRC 100480", "accession": "GCA_001544235.1", "taxid": 1351, "species_taxid": 1351, "relation_to_type": "type", "validated": true, "ani": 77.4038, "matched_fragments": 132, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterococcus faecalis", "strain": "strain=NCTC 775", "accession": "GCA_015311765.1", "taxid": 1351, "species_taxid": 1351, "relation_to_type": "type", "validated": true, "ani": 77.2799, "matched_fragments": 129, "total_fragments": 1375, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017830045.1", "gtdb_species": "s__Enterococcus sp017830045", "ani": 100.0, "matched_fragments": 1375, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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78.133, "matched_fragments": 136, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000407145.1", "gtdb_species": "s__Enterococcus caccae", "ani": 78.1195, "matched_fragments": 191, "total_fragments": 1375, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001730285.1", "gtdb_species": "s__Enterococcus ureasiticus", "ani": 78.035, "matched_fragments": 178, "total_fragments": 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