{ "type": "genome", "identifier": "GCF_017848315.1", "organism": "Pseudomonas palmensis", "title": "Pseudomonas palmensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biobab R&D S.L.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017848315.1", "bioproject": "PRJNA224116", "biosample": "SAMN18092217", "wgs_master": "JAFKEC000000000.1", "refseq_category": "reference genome", "taxid": "2815362", "species_taxid": "2815362", "organism_name": "Pseudomonas palmensis", "infraspecific_name": "strain=BBB001", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1784831v1", "asm_submitter": "Biobab R&D S.L.", "gbrs_paired_asm": "GCA_017848315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/848/315/GCF_017848315.1_ASM1784831v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5907058", "genome_size_ungapped": "5906850", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "128", "contig_count": "128", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017848315.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "5584", "protein_coding_gene_count": "5382", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas palmensis" ], "sample_taxid": [ "2815362" ], "sample_host_organism": [ "Nicotiana glauca" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ 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"strain": "strain=JCM 32154", "accession": "GCA_014648275.1", "taxid": 2364649, "species_taxid": 2364649, "relation_to_type": "type", "validated": true, "ani": 83.1448, "matched_fragments": 1042, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas arcuscaelestis", "strain": "strain=P66", "accession": "GCA_016881005.1", "taxid": 2710591, "species_taxid": 2710591, "relation_to_type": "type", "validated": true, "ani": 82.9967, "matched_fragments": 1100, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sputi", "strain": "strain=BML-PP014", "accession": "GCA_021603585.1", "taxid": 2892325, "species_taxid": 2892325, "relation_to_type": "type", "validated": true, "ani": 82.4822, "matched_fragments": 1033, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas pharyngis", "strain": "strain=BML-PP036", "accession": "GCA_021602345.1", "taxid": 2892333, "species_taxid": 2892333, "relation_to_type": "type", "validated": true, "ani": 82.3072, "matched_fragments": 1056, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 82.1696, "matched_fragments": 1017, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tohonis", "strain": "strain=TUM18999", "accession": "GCA_012767755.2", "taxid": 2725477, "species_taxid": 2725477, "relation_to_type": "type", "validated": true, "ani": 81.7282, "matched_fragments": 1017, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 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