{ "type": "genome", "identifier": "GCF_017868935.1", "organism": "Halomonas sulfidivorans", "title": "Halomonas sulfidivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of Oceanography, Ministry of Natural Resources of PR China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017868935.1", "bioproject": "PRJNA224116", "biosample": "SAMN14838975", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2733488", "species_taxid": "2733488", "organism_name": "Halomonas sulfidivorans", "infraspecific_name": "strain=MCCC 1A13718", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1786893v1", "asm_submitter": "The Third Institute of Oceanography, Ministry of Natural Resources of PR China", "gbrs_paired_asm": "GCA_017868935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/868/935/GCF_017868935.1_ASM1786893v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4572976", "genome_size_ungapped": "4572976", "gc_percent": "64.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017868935.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4292", "protein_coding_gene_count": "4178", "non_coding_gene_count": "84", "pubmed_id": "33815342" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonas sulfidivorans" ], "sample_taxid": [ "2733488" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "1.267 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4572976", "Number of Sequences": "1", "Longest Sequences (bp)": "4572976", "N50 (bp)": "4572976", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.2", "Number of CDSs": "4232", "Average Protein Length": "326.5", "Coding Ratio (%)": "90.6", "Number of rRNAs": "12", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas sulfidivorans", "strain": "strain=MCCC 1A13718", "accession": "GCA_017868935.1", "taxid": 2733488, "species_taxid": 2733488, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1524, "total_fragments": 1524, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Halomonas antri", "strain": "strain=Y3S6", "accession": "GCA_019430905.1", "taxid": 2846777, "species_taxid": 2846777, "relation_to_type": "type", "validated": true, "ani": 97.6986, "matched_fragments": 1349, "total_fragments": 1524, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 89.0252, "matched_fragments": 1276, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lactosivorans", "strain": "strain=KCTC 52281", "accession": "GCA_003254665.1", "taxid": 2185141, "species_taxid": 2185141, "relation_to_type": "type", "validated": true, "ani": 87.5522, "matched_fragments": 1182, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 86.8953, "matched_fragments": 1225, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas bachuensis", "strain": "strain=DX6", "accession": "GCA_011742165.1", "taxid": 2717286, "species_taxid": 2717286, "relation_to_type": "type", "validated": true, "ani": 86.5282, "matched_fragments": 1182, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zhangzhouensis", "strain": "strain=MCCC 1A11036", "accession": "GCA_021404465.1", "taxid": 2733481, "species_taxid": 2733481, "relation_to_type": "type", "validated": true, "ani": 86.082, "matched_fragments": 1052, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas kenyensis", "strain": "strain=DSM 17331", "accession": "GCA_013697085.1", "taxid": 321266, "species_taxid": 321266, "relation_to_type": "type", "validated": true, "ani": 84.337, "matched_fragments": 983, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas xinjiangensis", "strain": "strain=TRM 0175", "accession": "GCA_000759345.1", "taxid": 1166948, "species_taxid": 1166948, "relation_to_type": "type", "validated": true, "ani": 79.1536, "matched_fragments": 528, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 78.2961, "matched_fragments": 360, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sagittaria", "strain": "strain=JCM 18195", "accession": "GCA_900115715.1", "taxid": 1135990, "species_taxid": 1135990, "relation_to_type": "type", "validated": true, "ani": 77.9753, "matched_fragments": 345, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium gelatinicum", "strain": "strain=R-5-52-3", "accession": "GCA_008033445.1", "taxid": 2598725, "species_taxid": 2598725, "relation_to_type": "type", "validated": true, "ani": 77.0093, "matched_fragments": 149, "total_fragments": 1524, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017868935.1", "gtdb_species": "s__Halomonas sp017868935", "ani": 100.0, "matched_fragments": 1524, "total_fragments": 1524, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009834345.1", "gtdb_species": "s__Halomonas sp009834345", "ani": 86.8897, "matched_fragments": 1228, "total_fragments": 1524, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011742165.1", "gtdb_species": "s__Halomonas bachuensis", "ani": 86.5319, "matched_fragments": 1181, "total_fragments": 1524, "gtdb_taxonomy": 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