{
    "type": "genome",
    "identifier": "GCF_017873055.1",
    "organism": "Agrobacterium rubi",
    "title": "Agrobacterium rubi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017873055.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18244840",
        "wgs_master": "JAGGJS000000000.1",
        "refseq_category": "na",
        "taxid": "28099",
        "species_taxid": "28099",
        "organism_name": "Agrobacterium rubi",
        "infraspecific_name": "strain=DSM 6772",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/08",
        "asm_name": "ASM1787305v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_017873055.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/873/055/GCF_017873055.1_ASM1787305v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5291453",
        "genome_size_ungapped": "5291453",
        "gc_percent": "57.500000",
        "replicon_count": "0",
        "scaffold_count": "33",
        "contig_count": "33",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-27",
        "total_gene_count": "4984",
        "protein_coding_gene_count": "4870",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-08",
    "dateModified": "2021-04-08",
    "datePublished": "2021-04-08",
    "_annotation": {
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        "sample_organism": [
            "Agrobacterium rubi"
        ],
        "sample_taxid": [
            "28099"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
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        ],
        "sample_host_location_id": [],
        "data_size": "1.495 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
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            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
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    "_dfast": {
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        "Longest Sequences (bp)": "943818",
        "N50 (bp)": "522347",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.3",
        "Number of CDSs": "4970",
        "Average Protein Length": "310.5",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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            {
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                "organism_name": "Agrobacterium bohemicum",
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                "organism_name": "Agrobacterium tumefaciens",
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                "status": "below_threshold"
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            {
                "organism_name": "Neorhizobium lilium",
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                "status": "below_threshold"
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            {
                "organism_name": "Rhizobium petrolearium",
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                "species_taxid": 515361,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ciceribacter ferrooxidans",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
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}