{
    "type": "genome",
    "identifier": "GCF_017873605.1",
    "organism": "Paenibacillus lactis",
    "title": "Paenibacillus lactis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017873605.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18245291",
        "wgs_master": "JAGGKI000000000.1",
        "refseq_category": "reference genome",
        "taxid": "228574",
        "species_taxid": "228574",
        "organism_name": "Paenibacillus lactis",
        "infraspecific_name": "strain=DSM 15596",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/08",
        "asm_name": "ASM1787360v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_017873605.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/873/605/GCF_017873605.1_ASM1787360v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6738848",
        "genome_size_ungapped": "6738848",
        "gc_percent": "52.000000",
        "replicon_count": "0",
        "scaffold_count": "47",
        "contig_count": "47",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017873605.1-RS_2024_09_29",
        "annotation_date": "2024-09-29",
        "total_gene_count": "6103",
        "protein_coding_gene_count": "5953",
        "non_coding_gene_count": "81",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-08",
    "dateModified": "2021-04-08",
    "datePublished": "2021-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus lactis"
        ],
        "sample_taxid": [
            "228574"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.920 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6738848",
        "Number of Sequences": "47",
        "Longest Sequences (bp)": "718568",
        "N50 (bp)": "293556",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "51.9",
        "Number of CDSs": "6097",
        "Average Protein Length": "313.4",
        "Coding Ratio (%)": "85.1",
        "Number of rRNAs": "1",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paenibacillus lactis",
                "strain": "strain=DSM 15596",
                "accession": "GCA_017873605.1",
                "taxid": 228574,
                "species_taxid": 228574,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2221,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paenibacillus ihbetae",
                "strain": "strain=IHBB 9852",
                "accession": "GCA_002741055.1",
                "taxid": 1870820,
                "species_taxid": 1870820,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 93.7299,
                "matched_fragments": 1905,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus lautus",
                "strain": "strain=NBRC 15380",
                "accession": "GCA_004000945.1",
                "taxid": 1401,
                "species_taxid": 1401,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.9428,
                "matched_fragments": 1138,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus solani",
                "strain": "strain=FJAT-22460",
                "accession": "GCA_001277345.1",
                "taxid": 1705565,
                "species_taxid": 1705565,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.142,
                "matched_fragments": 777,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus glucanolyticus",
                "strain": "strain=NBRC 15330",
                "accession": "GCA_004000885.1",
                "taxid": 59843,
                "species_taxid": 59843,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1215,
                "matched_fragments": 901,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus macerans",
                "strain": "strain=ATCC 8244",
                "accession": "GCA_000746875.1",
                "taxid": 44252,
                "species_taxid": 44252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7863,
                "matched_fragments": 279,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus macerans",
                "strain": "strain=NBRC 15307",
                "accession": "GCA_004000965.1",
                "taxid": 44252,
                "species_taxid": 44252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7536,
                "matched_fragments": 270,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus timonensis",
                "strain": "strain=DSM 16943",
                "accession": "GCA_022427145.1",
                "taxid": 225915,
                "species_taxid": 225915,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5819,
                "matched_fragments": 240,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus gallinarum",
                "strain": "strain=Sa2BVA9",
                "accession": "GCA_014836635.1",
                "taxid": 2762232,
                "species_taxid": 2762232,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3291,
                "matched_fragments": 97,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus oralis",
                "strain": "strain=KCOM 3021",
                "accession": "GCA_003863965.1",
                "taxid": 2490856,
                "species_taxid": 2490856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2794,
                "matched_fragments": 286,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus stellifer",
                "strain": "strain=DSM 14472",
                "accession": "GCA_000758685.1",
                "taxid": 169760,
                "species_taxid": 169760,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1897,
                "matched_fragments": 239,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus physcomitrellae",
                "strain": "strain=XB",
                "accession": "GCA_002240225.1",
                "taxid": 1619311,
                "species_taxid": 1619311,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9597,
                "matched_fragments": 197,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus tianjinensis",
                "strain": "strain=TB2019",
                "accession": "GCA_017086365.1",
                "taxid": 2810347,
                "species_taxid": 2810347,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9466,
                "matched_fragments": 194,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus physcomitrellae",
                "strain": "strain=CGMCC 1.15044",
                "accession": "GCA_014640575.1",
                "taxid": 1619311,
                "species_taxid": 1619311,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9144,
                "matched_fragments": 192,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus riograndensis",
                "strain": "strain=SBR5",
                "accession": "GCA_000224945.2",
                "taxid": 483937,
                "species_taxid": 483937,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7193,
                "matched_fragments": 186,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus darwinianus",
                "strain": "strain=Br",
                "accession": "GCA_000598065.1",
                "taxid": 1380763,
                "species_taxid": 1380763,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6907,
                "matched_fragments": 106,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus piscarius",
                "strain": "strain=P121",
                "accession": "GCA_022234545.1",
                "taxid": 1089681,
                "species_taxid": 1089681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.668,
                "matched_fragments": 233,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus lycopersici",
                "strain": "strain=12200R-189",
                "accession": "GCA_010119935.1",
                "taxid": 2704462,
                "species_taxid": 2704462,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5154,
                "matched_fragments": 173,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus methanolicus",
                "strain": "strain=BL24",
                "accession": "GCA_008124765.1",
                "taxid": 582686,
                "species_taxid": 582686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3039,
                "matched_fragments": 193,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus glycinis",
                "strain": "strain=T1",
                "accession": "GCA_009909185.1",
                "taxid": 2697035,
                "species_taxid": 2697035,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2877,
                "matched_fragments": 162,
                "total_fragments": 2222,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017873605.1",
                "gtdb_species": "s__Paenibacillus lactis",
                "ani": 100.0,
                "matched_fragments": 2221,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.99",
                "min_intra_species_ani": "97.11",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 16,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002741055.1",
                "gtdb_species": "s__Paenibacillus ihbetae",
                "ani": 93.7299,
                "matched_fragments": 1905,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.87",
                "min_intra_species_ani": "98.87",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_015326965.1",
                "gtdb_species": "s__Paenibacillus sp001860525",
                "ani": 81.4731,
                "matched_fragments": 1159,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.48",
                "min_intra_species_ani": "95.93",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_014863545.1",
                "gtdb_species": "s__Paenibacillus lautus_A",
                "ani": 81.1088,
                "matched_fragments": 1168,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.37",
                "min_intra_species_ani": "95.82",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_004000945.1",
                "gtdb_species": "s__Paenibacillus lautus",
                "ani": 80.9601,
                "matched_fragments": 1135,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.53",
                "min_intra_species_ani": "96.53",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002573715.1",
                "gtdb_species": "s__Paenibacillus sp002573715",
                "ani": 80.76,
                "matched_fragments": 1062,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.52",
                "min_intra_species_ani": "95.81",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_004000885.1",
                "gtdb_species": "s__Paenibacillus glucanolyticus",
                "ani": 80.1275,
                "matched_fragments": 900,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.37",
                "min_intra_species_ani": "98.87",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_002272015.1",
                "gtdb_species": "s__Paenibacillus campinasensis",
                "ani": 79.852,
                "matched_fragments": 694,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "99.19",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900454495.1",
                "gtdb_species": "s__Paenibacillus_A macerans",
                "ani": 77.7415,
                "matched_fragments": 278,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.51",
                "min_intra_species_ani": "99.09",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_009870825.1",
                "gtdb_species": "s__Paenibacillus albilobatus",
                "ani": 77.7311,
                "matched_fragments": 385,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.80",
                "min_intra_species_ani": "99.80",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018333315.1",
                "gtdb_species": "s__Paenibacillus azoreducens",
                "ani": 77.5738,
                "matched_fragments": 303,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.74",
                "min_intra_species_ani": "97.74",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004001045.1",
                "gtdb_species": "s__Paenibacillus chibensis",
                "ani": 77.3917,
                "matched_fragments": 327,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003863965.1",
                "gtdb_species": "s__Paenibacillus_A oralis",
                "ani": 77.2651,
                "matched_fragments": 285,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000758685.1",
                "gtdb_species": "s__Paenibacillus stellifer",
                "ani": 77.1784,
                "matched_fragments": 239,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000758665.1",
                "gtdb_species": "s__Paenibacillus borealis",
                "ani": 76.8524,
                "matched_fragments": 204,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010119935.1",
                "gtdb_species": "s__Paenibacillus_Z lycopersici",
                "ani": 76.5154,
                "matched_fragments": 173,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_Z",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008124765.1",
                "gtdb_species": "s__Paenibacillus_Z methanolicus",
                "ani": 76.3044,
                "matched_fragments": 193,
                "total_fragments": 2222,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_Z",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.125,
        "cell_length": 0.653,
        "doubling_h": 0.565,
        "growth_tmp": 30.0,
        "optimum_tmp": 35.0,
        "optimum_ph": 7.0,
        "genome_size": 6848306.0,
        "gc_content": 50.283,
        "coding_genes": 5381.029,
        "rRNA16S_genes": 10.237,
        "tRNA_genes": 93.313,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.9,
        "thermophilic_range_tmp": 0.033,
        "psychrophilic_range_tmp": 0.066,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paenibacillus",
        "lactis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}