{
    "type": "genome",
    "identifier": "GCF_017873755.1",
    "organism": "Jeotgalicoccus aerolatus",
    "title": "Jeotgalicoccus aerolatus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017873755.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18248552",
        "wgs_master": "JAGGKN000000000.1",
        "refseq_category": "na",
        "taxid": "709510",
        "species_taxid": "709510",
        "organism_name": "Jeotgalicoccus aerolatus",
        "infraspecific_name": "strain=DSM 22420",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/08",
        "asm_name": "ASM1787375v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_017873755.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/873/755/GCF_017873755.1_ASM1787375v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2101535",
        "genome_size_ungapped": "2101535",
        "gc_percent": "40.500000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "9",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017873755.1-RS_2024_04_29",
        "annotation_date": "2024-04-29",
        "total_gene_count": "2181",
        "protein_coding_gene_count": "2093",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-08",
    "dateModified": "2021-04-08",
    "datePublished": "2021-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Jeotgalicoccus aerolatus"
        ],
        "sample_taxid": [
            "709510"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "0.595 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2101535",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "615508",
        "N50 (bp)": "248836",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.4",
        "Number of CDSs": "2139",
        "Average Protein Length": "295.9",
        "Coding Ratio (%)": "90.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Jeotgalicoccus aerolatus",
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                "accession": "GCA_017873755.1",
                "taxid": 709510,
                "species_taxid": 709510,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 695,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Jeotgalicoccus aerolatus",
                "strain": "strain=CIP 111750",
                "accession": "GCA_903994055.1",
                "taxid": 709510,
                "species_taxid": 709510,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9991,
                "matched_fragments": 696,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Jeotgalicoccus aerolatus",
                "strain": "strain=CCM 7679",
                "accession": "GCA_014635205.1",
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                "relation_to_type": "type",
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                "ani": 99.989,
                "matched_fragments": 694,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Jeotgalicoccus halotolerans",
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                "accession": "GCA_003387165.1",
                "taxid": 157227,
                "species_taxid": 157227,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9937,
                "matched_fragments": 521,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jeotgalicoccus psychrophilus",
                "strain": "strain=DSM 19085",
                "accession": "GCA_000425845.1",
                "taxid": 157228,
                "species_taxid": 157228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5672,
                "matched_fragments": 545,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jeotgalicoccus coquinae",
                "strain": "strain=CIP 111751",
                "accession": "GCA_903994065.1",
                "taxid": 709509,
                "species_taxid": 709509,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.318,
                "matched_fragments": 521,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jeotgalicoccus saudimassiliensis",
                "strain": "strain=13MG44_air",
                "accession": "GCA_000756715.2",
                "taxid": 1461582,
                "species_taxid": 1461582,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.02,
                "matched_fragments": 502,
                "total_fragments": 696,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_014635205.1",
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                "matched_fragments": 694,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.67",
                "min_intra_species_ani": "99.03",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003387165.1",
                "gtdb_species": "s__Jeotgalicoccus halotolerans",
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                "matched_fragments": 521,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 96.2898,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004570955.1",
                "gtdb_species": "s__Jeotgalicoccus nanhaiensis",
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                "matched_fragments": 530,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 96.2898,
                "mean_intra_species_ani": "99.28",
                "min_intra_species_ani": "98.57",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000425845.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
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                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCA_003513765.1",
                "gtdb_species": "s__Jeotgalicoccus sp003513765",
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                "matched_fragments": 506,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_014207425.1",
                "gtdb_species": "s__Jeotgalicoccus coquinae",
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                "matched_fragments": 516,
                "total_fragments": 696,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Staphylococcales;f__Salinicoccaceae;g__Jeotgalicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000756715.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.243,
        "cell_length": 0.243,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 39.5,
        "optimum_ph": 7.625,
        "genome_size": 2231323.0,
        "gc_content": 40.2,
        "coding_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.0,
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        "psychrophilic_range_tmp": 1.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Jeotgalicoccus",
        "aerolatus"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}