{ "type": "genome", "identifier": "GCF_017873955.1", "organism": "Sedimentibacter acidaminivorans", "title": "Sedimentibacter acidaminivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017873955.1", "bioproject": "PRJNA224116", "biosample": "SAMN18244839", "wgs_master": "JAGGKS000000000.1", "refseq_category": "reference genome", "taxid": "913099", "species_taxid": "913099", "organism_name": "Sedimentibacter acidaminivorans", "infraspecific_name": "strain=DSM 24004", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1787395v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_017873955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/873/955/GCF_017873955.1_ASM1787395v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3509220", "genome_size_ungapped": "3509220", "gc_percent": "30.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017873955.1-RS_2024_04_29", "annotation_date": "2024-04-29", "total_gene_count": "3313", "protein_coding_gene_count": "3216", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Sedimentibacter acidaminivorans" ], "sample_taxid": [ "913099" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.966 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3509220", "Number of Sequences": "23", "Longest Sequences (bp)": "697306", "N50 (bp)": "307943", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "30.3", "Number of CDSs": "3276", "Average Protein Length": "315.4", "Coding Ratio (%)": "88.3", "Number of rRNAs": "1", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sedimentibacter acidaminivorans", "strain": "strain=DSM 24004", "accession": "GCA_017873955.1", "taxid": 913099, 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"type", "validated": true, "ani": 75.5479, "matched_fragments": 55, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporosalibacterium faouarense", "strain": "strain=SOL3f37", "accession": "GCA_016765695.1", "taxid": 516123, "species_taxid": 516123, "relation_to_type": "type", "validated": true, "ani": 75.4313, "matched_fragments": 60, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridiisalibacter paucivorans", "strain": "strain=DSM 22131", "accession": "GCA_000620125.1", "taxid": 408753, "species_taxid": 408753, "relation_to_type": "type", "validated": true, "ani": 75.3596, "matched_fragments": 51, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter mayombei", "strain": "strain=DSM 6539", "accession": "GCA_020748465.1", "taxid": 1541, "species_taxid": 1541, "relation_to_type": "type", "validated": true, "ani": 75.2071, "matched_fragments": 62, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraclostridium benzoelyticum", "strain": "strain=JC272", "accession": "GCA_001006285.1", "taxid": 1629550, "species_taxid": 1629550, "relation_to_type": "type", "validated": true, "ani": 75.152, "matched_fragments": 52, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraclostridium bifermentans", "strain": "strain=DSM 14991", "accession": "GCA_019916025.1", "taxid": 1490, "species_taxid": 1490, "relation_to_type": "type", "validated": true, "ani": 75.0525, "matched_fragments": 72, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraclostridium bifermentans", "strain": "strain=ATCC 638", "accession": "GCA_000452245.2", "taxid": 1490, "species_taxid": 1490, "relation_to_type": "type", "validated": true, "ani": 75.0367, "matched_fragments": 73, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paeniclostridium sordellii", "strain": "strain=ATCC9714", "accession": "GCA_000953675.1", "taxid": 1505, "species_taxid": 1505, "relation_to_type": "type", "validated": true, "ani": 74.9652, "matched_fragments": 70, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter glycolicus", "strain": "strain=ATCC 14880", "accession": "GCA_000373865.1", "taxid": 36841, "species_taxid": 36841, "relation_to_type": "suspected-type", "validated": true, "ani": 74.9401, "matched_fragments": 72, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Terrisporobacter glycolicus", "strain": "strain=DSM 1288", "accession": "GCA_000439105.1", "taxid": 36841, "species_taxid": 36841, "relation_to_type": "suspected-type", "validated": true, "ani": 74.9215, "matched_fragments": 70, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium massiliodielmoense", "strain": "strain=MT26", "accession": "GCA_900176615.1", "taxid": 1776385, "species_taxid": 1776385, "relation_to_type": "type", "validated": true, "ani": 74.9189, "matched_fragments": 54, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium cagae", "strain": "strain=Marseille-P4344", "accession": "GCA_900290265.1", "taxid": 2080751, "species_taxid": 2080751, "relation_to_type": "type", "validated": true, "ani": 74.8534, "matched_fragments": 83, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clostridium prolinivorans", "strain": "strain=PYR-10", "accession": "GCA_004011155.1", "taxid": 2769420, "species_taxid": 2769420, "relation_to_type": "type", "validated": true, "ani": 74.852, "matched_fragments": 67, "total_fragments": 1159, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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}, "_genome_taxon": [ "Sedimentibacter", "acidaminivorans" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }