{ "type": "genome", "identifier": "GCF_017874075.1", "organism": "Cohnella thailandensis", "title": "Cohnella thailandensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017874075.1", "bioproject": "PRJNA224116", "biosample": "SAMN18247111", "wgs_master": "JAGGKW000000000.1", "refseq_category": "reference genome", "taxid": "557557", "species_taxid": "557557", "organism_name": "Cohnella thailandensis", "infraspecific_name": "strain=DSM 25241", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1787407v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_017874075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/874/075/GCF_017874075.1_ASM1787407v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6922863", "genome_size_ungapped": "6922863", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017874075.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "6137", "protein_coding_gene_count": "6022", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Cohnella thailandensis" ], "sample_taxid": [ "557557" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.948 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6922863", "Number of Sequences": "31", "Longest Sequences (bp)": "772394", "N50 (bp)": "390572", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.0", "Number of CDSs": "6171", "Average Protein Length": "333.2", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "65", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cohnella thailandensis", "strain": "strain=DSM 25241", "accession": "GCA_017874075.1", "taxid": 557557, "species_taxid": 557557, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2291, 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"below_threshold" }, { "organism_name": "Cohnella thermotolerans", "strain": "strain=DSM 17683", "accession": "GCA_000429825.1", "taxid": 329858, "species_taxid": 329858, "relation_to_type": "type", "validated": true, "ani": 79.4109, "matched_fragments": 630, "total_fragments": 2291, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella zeiphila", "strain": "strain=CBP-2801", "accession": "GCA_014212055.1", "taxid": 2761120, "species_taxid": 2761120, "relation_to_type": "type", "validated": true, "ani": 79.2824, "matched_fragments": 702, "total_fragments": 2291, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella lubricantis", "strain": "strain=DSM 103658", "accession": "GCA_017874835.1", "taxid": 2163172, "species_taxid": 2163172, "relation_to_type": "type", "validated": true, "ani": 79.2077, "matched_fragments": 565, "total_fragments": 2291, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella 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"accession": "GCA_003854965.1", "taxid": 1850366, "species_taxid": 1850366, "relation_to_type": "type", "validated": true, "ani": 76.9756, "matched_fragments": 105, "total_fragments": 2291, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus algicola", "strain": "strain=HB172198", "accession": "GCA_005577435.1", "taxid": 2565926, "species_taxid": 2565926, "relation_to_type": "type", "validated": true, "ani": 76.509, "matched_fragments": 70, "total_fragments": 2291, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus mendelii", "strain": "strain=C/2", "accession": "GCA_024498075.1", "taxid": 206163, "species_taxid": 206163, "relation_to_type": "type", "validated": true, "ani": 76.4072, "matched_fragments": 119, "total_fragments": 2291, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014212135.1", "gtdb_species": "s__Cohnella thailandensis", "ani": 99.9901, "matched_fragments": 2277, "total_fragments": 2291, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003990975.1", "gtdb_species": "s__Cohnella sp003990975", "ani": 82.677, "matched_fragments": 1134, "total_fragments": 2291, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004801405.1", "gtdb_species": "s__Cohnella sp004801405", "ani": 82.6508, "matched_fragments": 1197, "total_fragments": 2291, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014212175.1", "gtdb_species": "s__Cohnella xylanilytica", "ani": 80.5928, "matched_fragments": 930, "total_fragments": 2291, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000429825.1", "gtdb_species": "s__Cohnella thermotolerans", "ani": 79.4269, "matched_fragments": 627, 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014212125.1", "gtdb_species": "s__Cohnella nanjingensis", "ani": 78.7765, "matched_fragments": 652, "total_fragments": 2291, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.699, "cell_length": 0.079, "doubling_h": null, "growth_tmp": 35.0, "optimum_tmp": 37.0, "optimum_ph": 7.0, "genome_size": 4660270.0, "gc_content": 55.152, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 1.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.5, "thermophilic_range_tmp": 0.5, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Cohnella", "thailandensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }