{
    "type": "genome",
    "identifier": "GCF_017874235.1",
    "organism": "Halolamina salifodinae",
    "title": "Halolamina salifodinae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017874235.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18247528",
        "wgs_master": "JAGGLC000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1202767",
        "species_taxid": "1202767",
        "organism_name": "Halolamina salifodinae",
        "infraspecific_name": "strain=DSM 26232",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/08",
        "asm_name": "ASM1787423v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_017874235.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/874/235/GCF_017874235.1_ASM1787423v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "2752321",
        "genome_size_ungapped": "2752321",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "9",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017874235.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "2892",
        "protein_coding_gene_count": "2798",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-08",
    "dateModified": "2021-04-08",
    "datePublished": "2021-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halolamina salifodinae"
        ],
        "sample_taxid": [
            "1202767"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.750 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2752321",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "878934",
        "N50 (bp)": "461436",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.6",
        "Number of CDSs": "2828",
        "Average Protein Length": "287.5",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Halolamina salifodinae",
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                "accession": "GCA_017874235.1",
                "taxid": 1202767,
                "species_taxid": 1202767,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 911,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halolamina pelagica",
                "strain": "strain=CGMCC 1.10329",
                "accession": "GCA_900115675.1",
                "taxid": 699431,
                "species_taxid": 699431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0761,
                "matched_fragments": 670,
                "total_fragments": 911,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halolamina rubra",
                "strain": "strain=CBA1107",
                "accession": "GCA_000739555.1",
                "taxid": 1380430,
                "species_taxid": 1380430,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8827,
                "matched_fragments": 648,
                "total_fragments": 911,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halolamina sediminis",
                "strain": "strain=halo7",
                "accession": "GCA_001282785.1",
                "taxid": 1480675,
                "species_taxid": 1480675,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2057,
                "matched_fragments": 673,
                "total_fragments": 911,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorubrum rutilum",
                "strain": "strain=YJ-18-S1",
                "accession": "GCA_024494565.1",
                "taxid": 1364933,
                "species_taxid": 1364933,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1543,
                "matched_fragments": 361,
                "total_fragments": 911,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobaculum gomorrense",
                "strain": "strain=DSM 9297",
                "accession": "GCA_900129775.1",
                "taxid": 43928,
                "species_taxid": 43928,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1182,
                "matched_fragments": 388,
                "total_fragments": 911,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halalkaliarchaeum desulfuricum",
                "strain": "strain=AArc-Sl",
                "accession": "GCA_002952775.1",
                "taxid": 2055893,
                "species_taxid": 2055893,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4521,
                "matched_fragments": 231,
                "total_fragments": 911,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017874235.1",
                "gtdb_species": "s__Halolamina salifodinae",
                "ani": 100.0,
                "matched_fragments": 910,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halolamina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900115675.1",
                "gtdb_species": "s__Halolamina pelagica",
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                "matched_fragments": 668,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halolamina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000739555.1",
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                "matched_fragments": 648,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halolamina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001307315.1",
                "gtdb_species": "s__Halolamina pelagica_B",
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                "total_fragments": 911,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halolamina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002025255.2",
                "gtdb_species": "s__Halolamina sp002025255",
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                "matched_fragments": 683,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halolamina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001282785.1",
                "gtdb_species": "s__Halolamina sediminis",
                "ani": 85.2049,
                "matched_fragments": 675,
                "total_fragments": 911,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halolamina",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.31,
        "cell_length": 0.088,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 39.5,
        "optimum_ph": 7.25,
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        "gc_content": 67.604,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Halolamina",
        "salifodinae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}