{
    "type": "genome",
    "identifier": "GCF_017874315.1",
    "organism": "Symbiobacterium terraclitae",
    "title": "Symbiobacterium terraclitae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017874315.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18248574",
        "wgs_master": "JAGGLG000000000.1",
        "refseq_category": "reference genome",
        "taxid": "557451",
        "species_taxid": "557451",
        "organism_name": "Symbiobacterium terraclitae",
        "infraspecific_name": "strain=DSM 27138",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/08",
        "asm_name": "ASM1787431v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_017874315.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/874/315/GCF_017874315.1_ASM1787431v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3897060",
        "genome_size_ungapped": "3897060",
        "gc_percent": "69.000000",
        "replicon_count": "0",
        "scaffold_count": "71",
        "contig_count": "71",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017874315.1-RS_2024_04_30",
        "annotation_date": "2024-04-30",
        "total_gene_count": "3630",
        "protein_coding_gene_count": "3527",
        "non_coding_gene_count": "86",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-08",
    "dateModified": "2021-04-08",
    "datePublished": "2021-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Symbiobacterium terraclitae"
        ],
        "sample_taxid": [
            "557451"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.065 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3897060",
        "Number of Sequences": "71",
        "Longest Sequences (bp)": "271792",
        "N50 (bp)": "102023",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.2",
        "Number of CDSs": "3659",
        "Average Protein Length": "311.9",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "84",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Symbiobacterium terraclitae",
                "strain": "strain=DSM 27138",
                "accession": "GCA_017874315.1",
                "taxid": 557451,
                "species_taxid": 557451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1259,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Symbiobacterium thermophilum",
                "strain": "strain=IAM14863",
                "accession": "GCA_000009905.1",
                "taxid": 2734,
                "species_taxid": 2734,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6336,
                "matched_fragments": 834,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermaerobacter marianensis",
                "strain": "strain=DSM 12885",
                "accession": "GCA_000184705.1",
                "taxid": 73919,
                "species_taxid": 73919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8669,
                "matched_fragments": 143,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Adlercreutzia caecimuris",
                "strain": "strain=B7",
                "accession": "GCA_000403355.2",
                "taxid": 671266,
                "species_taxid": 671266,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5328,
                "matched_fragments": 51,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Luteimonas colneyensis",
                "strain": "strain=Sa2BVA3",
                "accession": "GCA_014836665.1",
                "taxid": 2762230,
                "species_taxid": 2762230,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0275,
                "matched_fragments": 89,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus kandeliicorticis",
                "strain": "strain=DSM 100723",
                "accession": "GCA_014137855.1",
                "taxid": 1759536,
                "species_taxid": 1759536,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9911,
                "matched_fragments": 114,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vulcaniibacterium gelatinicum",
                "strain": "strain=R-5-52-3",
                "accession": "GCA_008033445.1",
                "taxid": 2598725,
                "species_taxid": 2598725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9615,
                "matched_fragments": 76,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides acrostichi",
                "strain": "strain=CBS4Y-1",
                "accession": "GCA_015319165.1",
                "taxid": 2784339,
                "species_taxid": 2784339,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.936,
                "matched_fragments": 97,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas ludipueritiae",
                "strain": "strain=DSM 14915",
                "accession": "GCA_014490445.1",
                "taxid": 198093,
                "species_taxid": 198093,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9046,
                "matched_fragments": 104,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas kuykendallii",
                "strain": "strain=NRRL B-59562",
                "accession": "GCA_900106975.1",
                "taxid": 1007099,
                "species_taxid": 1007099,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8831,
                "matched_fragments": 83,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia farcinica",
                "strain": "strain=DSM 43257",
                "accession": "GCA_900156775.1",
                "taxid": 37329,
                "species_taxid": 37329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8527,
                "matched_fragments": 134,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia farcinica",
                "strain": "strain=NBRC 15532",
                "accession": "GCA_001612925.1",
                "taxid": 37329,
                "species_taxid": 37329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.85,
                "matched_fragments": 135,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia farcinica",
                "strain": "strain=NCTC11134",
                "accession": "GCA_001182745.2",
                "taxid": 37329,
                "species_taxid": 37329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8459,
                "matched_fragments": 135,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudonocardia cypriaca",
                "strain": "strain=DSM 45511",
                "accession": "GCA_006717045.1",
                "taxid": 882449,
                "species_taxid": 882449,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7739,
                "matched_fragments": 162,
                "total_fragments": 1261,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017874315.1",
                "gtdb_species": "s__Symbiobacterium terraclitae",
                "ani": 100.0,
                "matched_fragments": 1259,
                "total_fragments": 1261,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Symbiobacteriia;o__Symbiobacteriales;f__Symbiobacteriaceae;g__Symbiobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000009905.1",
                "gtdb_species": "s__Symbiobacterium thermophilum",
                "ani": 82.6269,
                "matched_fragments": 835,
                "total_fragments": 1261,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Symbiobacteriia;o__Symbiobacteriales;f__Symbiobacteriaceae;g__Symbiobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003242675.1",
                "gtdb_species": "s__Symbiobacterium sp003242675",
                "ani": 82.5096,
                "matched_fragments": 671,
                "total_fragments": 1261,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Symbiobacteriia;o__Symbiobacteriales;f__Symbiobacteriaceae;g__Symbiobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003242505.1",
                "gtdb_species": "s__ZC4RG38 sp003242505",
                "ani": 77.1168,
                "matched_fragments": 209,
                "total_fragments": 1261,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Symbiobacteriia;o__Symbiobacteriales;f__ZC4RG38;g__ZC4RG38",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004634385.1",
                "gtdb_species": "s__Thermaerobacter sp004634385",
                "ani": 76.0413,
                "matched_fragments": 132,
                "total_fragments": 1261,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Thermaerobacteria;o__Thermaerobacterales;f__Thermaerobacteraceae;g__Thermaerobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000184705.1",
                "gtdb_species": "s__Thermaerobacter marianensis",
                "ani": 75.873,
                "matched_fragments": 142,
                "total_fragments": 1261,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Thermaerobacteria;o__Thermaerobacterales;f__Thermaerobacteraceae;g__Thermaerobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902765395.1",
                "gtdb_species": "s__UBA2862 sp902765395",
                "ani": 75.7116,
                "matched_fragments": 75,
                "total_fragments": 1261,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Christensenellales;f__CAG-74;g__UBA2862",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903919045.1",
                "gtdb_species": "s__CAILLO01 sp903919045",
                "ani": 75.1975,
                "matched_fragments": 61,
                "total_fragments": 1261,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__UBA5734;g__CAILLO01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011362545.1",
                "gtdb_species": "s__DSTP01 sp011362545",
                "ani": 75.1409,
                "matched_fragments": 71,
                "total_fragments": 1261,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__DSTP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016190985.1",
                "gtdb_species": "s__Lacunisphaera sp016190985",
                "ani": 75.0154,
                "matched_fragments": 68,
                "total_fragments": 1261,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Opitutales;f__Opitutaceae;g__Lacunisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900106975.1",
                "gtdb_species": "s__Pseudomonas_O kuykendallii",
                "ani": 74.8831,
                "matched_fragments": 83,
                "total_fragments": 1261,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_O",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.83",
                "min_intra_species_ani": "96.68",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 0.227,
        "growth_tmp": 55.0,
        "optimum_tmp": 60.0,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Symbiobacterium",
        "terraclitae"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}