{ "type": "genome", "identifier": "GCF_017874515.1", "organism": "Streptomyces avidinii", "title": "Streptomyces avidinii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017874515.1", "bioproject": "PRJNA224116", "biosample": "SAMN18247115", "wgs_master": "JAGGLQ000000000.1", "refseq_category": "na", "taxid": "1895", "species_taxid": "1895", "organism_name": "Streptomyces avidinii", "infraspecific_name": "strain=DSM 40526", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1787451v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_017874515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/874/515/GCF_017874515.1_ASM1787451v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8355800", "genome_size_ungapped": "8355800", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017874515.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "7634", "protein_coding_gene_count": "7319", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces avidinii" ], "sample_taxid": [ "1895" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" 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99.9875, "matched_fragments": 2735, "total_fragments": 2765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002080455.1", "gtdb_species": "s__Streptomyces sp002080455", "ani": 94.4956, "matched_fragments": 2312, "total_fragments": 2765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.34", "min_intra_species_ani": "98.21", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_017639205.1", "gtdb_species": "s__Streptomyces nojiriensis", "ani": 92.199, 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