{
    "type": "genome",
    "identifier": "GCF_017874535.1",
    "organism": "Anaerococcus nagyae",
    "title": "Anaerococcus nagyae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017874535.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18247816",
        "wgs_master": "JAGGLS000000000.1",
        "refseq_category": "na",
        "taxid": "1755241",
        "species_taxid": "1755241",
        "organism_name": "Anaerococcus nagyae",
        "infraspecific_name": "strain=DSM 101193",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/08",
        "asm_name": "ASM1787453v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_017874535.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/874/535/GCF_017874535.1_ASM1787453v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1751430",
        "genome_size_ungapped": "1751430",
        "gc_percent": "30.500000",
        "replicon_count": "0",
        "scaffold_count": "16",
        "contig_count": "16",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017874535.1-RS_2024_04_30",
        "annotation_date": "2024-04-30",
        "total_gene_count": "1697",
        "protein_coding_gene_count": "1626",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-08",
    "dateModified": "2021-04-08",
    "datePublished": "2021-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Anaerococcus nagyae"
        ],
        "sample_taxid": [
            "1755241"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.483 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1751430",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "432869",
        "N50 (bp)": "162573",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.6",
        "Number of CDSs": "1633",
        "Average Protein Length": "319.4",
        "Coding Ratio (%)": "89.3",
        "Number of rRNAs": "3",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Anaerococcus nagyae",
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                "accession": "GCA_017874535.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Anaerococcus octavius",
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                "accession": "GCA_900445265.1",
                "taxid": 54007,
                "species_taxid": 54007,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.8036,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus provencensis",
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                "accession": "GCA_000312365.2",
                "taxid": 938293,
                "species_taxid": 938293,
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                "validated": true,
                "ani": 79.6923,
                "matched_fragments": 228,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus urinomassiliensis",
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                "species_taxid": 1745712,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6315,
                "matched_fragments": 242,
                "total_fragments": 577,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus vaginimassiliensis",
                "strain": "strain=Marseille-P4512",
                "accession": "GCA_900626155.1",
                "taxid": 2042308,
                "species_taxid": 2042308,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1162,
                "matched_fragments": 141,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus ihuae",
                "strain": "strain=Marseille-Q5893",
                "accession": "GCA_928368155.1",
                "taxid": 2899519,
                "species_taxid": 2899519,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8874,
                "matched_fragments": 112,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus tetradius",
                "strain": "strain=ATCC 35098",
                "accession": "GCA_000159095.1",
                "taxid": 33036,
                "species_taxid": 33036,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 119,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus vaginalis",
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                "accession": "GCA_016127475.1",
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                "species_taxid": 33037,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus jeddahensis",
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                "accession": "GCA_001182725.1",
                "taxid": 1673719,
                "species_taxid": 1673719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4769,
                "matched_fragments": 103,
                "total_fragments": 577,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus degeneri",
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                "accession": "GCA_020215685.1",
                "taxid": 361500,
                "species_taxid": 361500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4463,
                "matched_fragments": 95,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Anaerococcus vaginalis",
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                "accession": "GCA_000163295.1",
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                "species_taxid": 33037,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2897,
                "matched_fragments": 104,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        "gtdb_result": [
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                "accession": "GCF_017874535.1",
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                "ani": 100.0,
                "matched_fragments": 576,
                "total_fragments": 577,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
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                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.89",
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                "num_clustered_genomes": 3,
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            {
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                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_000312365.2",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Anaerococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_900232825.1",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}