{
    "type": "genome",
    "identifier": "GCF_017874615.1",
    "organism": "Paenibacillus xylanexedens",
    "title": "Paenibacillus xylanexedens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017874615.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18247788",
        "wgs_master": "JAGIKV000000000.1",
        "refseq_category": "na",
        "taxid": "528191",
        "species_taxid": "528191",
        "organism_name": "Paenibacillus xylanexedens",
        "infraspecific_name": "strain=DSM 21292",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/08",
        "asm_name": "ASM1787461v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_017874615.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/874/615/GCF_017874615.1_ASM1787461v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6991849",
        "genome_size_ungapped": "6991849",
        "gc_percent": "46.000000",
        "replicon_count": "0",
        "scaffold_count": "56",
        "contig_count": "56",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017874615.1-RS_2024_04_27",
        "annotation_date": "2024-04-27",
        "total_gene_count": "6212",
        "protein_coding_gene_count": "6057",
        "non_coding_gene_count": "103",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-08",
    "dateModified": "2021-04-08",
    "datePublished": "2021-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus xylanexedens"
        ],
        "sample_taxid": [
            "528191"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.001 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6991849",
        "Number of Sequences": "56",
        "Longest Sequences (bp)": "484823",
        "N50 (bp)": "238279",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.0",
        "Number of CDSs": "6237",
        "Average Protein Length": "319.0",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "82",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paenibacillus xylanexedens",
                "strain": "strain=DSM 21292",
                "accession": "GCA_017874615.1",
                "taxid": 528191,
                "species_taxid": 528191,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2302,
                "total_fragments": 2302,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paenibacillus amylolyticus",
                "strain": "strain=NBRC 15957",
                "accession": "GCA_004001025.1",
                "taxid": 1451,
                "species_taxid": 1451,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 96.0662,
                "matched_fragments": 1985,
                "total_fragments": 2302,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paenibacillus taichungensis",
                "strain": "strain=DSM 19942",
                "accession": "GCA_013359905.1",
                "taxid": 484184,
                "species_taxid": 484184,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6207,
                "matched_fragments": 1500,
                "total_fragments": 2302,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus pabuli",
                "strain": "strain=NBRC 13638",
                "accession": "GCA_001514495.1",
                "taxid": 1472,
                "species_taxid": 1472,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.5706,
                "matched_fragments": 1506,
                "total_fragments": 2302,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus xylanivorans",
                "strain": "strain=A59",
                "accession": "GCA_001280595.1",
                "taxid": 1705561,
                "species_taxid": 1705561,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4632,
                "matched_fragments": 1446,
                "total_fragments": 2302,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus xylanilyticus",
                "strain": "strain=LMG 21957",
                "accession": "GCA_013359935.1",
                "taxid": 248903,
                "species_taxid": 248903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4831,
                "matched_fragments": 1269,
                "total_fragments": 2302,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus illinoisensis",
                "strain": "strain=NBRC 15959",
                "accession": "GCA_004000925.1",
                "taxid": 59845,
                "species_taxid": 59845,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1534,
                "matched_fragments": 1248,
                "total_fragments": 2302,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017874615.1",
                "gtdb_species": "s__Paenibacillus xylanexedens",
                "ani": 100.0,
                "matched_fragments": 2302,
                "total_fragments": 2302,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 96.078,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004001025.1",
                "gtdb_species": "s__Paenibacillus amylolyticus",
                "ani": 96.07,
                "matched_fragments": 1984,
                "total_fragments": 2302,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 96.2155,
                "mean_intra_species_ani": "97.25",
                "min_intra_species_ani": "97.08",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_001908275.1",
                "gtdb_species": "s__Paenibacillus xylanexedens_A",
                "ani": 95.8628,
                "matched_fragments": 2082,
                "total_fragments": 2302,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 96.2155,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000316035.1",
                "gtdb_species": "s__Paenibacillus sp000316035",
                "ani": 95.791,
                "matched_fragments": 1968,
                "total_fragments": 2302,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.8348,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001955855.1",
                "gtdb_species": "s__Paenibacillus sp001955855",
                "ani": 95.2824,
                "matched_fragments": 1958,
                "total_fragments": 2302,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.7262,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900101225.1",
                "gtdb_species": "s__Paenibacillus sp900101225",
                "ani": 94.9977,
                "matched_fragments": 1973,
                "total_fragments": 2302,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.22,
                "mean_intra_species_ani": "98.17",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_008386395.1",
                "gtdb_species": "s__Paenibacillus amylolyticus_B",
                "ani": 94.6038,
                "matched_fragments": 1999,
                "total_fragments": 2302,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "95.65",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_018614975.1",
                "gtdb_species": "s__Paenibacillus polymyxa_E",
                "ani": 94.2878,
                "matched_fragments": 1838,
                "total_fragments": 2302,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003287275.1",
                "gtdb_species": "s__Paenibacillus taichungensis_A",
                "ani": 83.5626,
                "matched_fragments": 1475,
                "total_fragments": 2302,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.187,
        "cell_length": 0.433,
        "doubling_h": 0.565,
        "growth_tmp": 30.0,
        "optimum_tmp": 23.0,
        "optimum_ph": 6.0,
        "genome_size": 7098239.25,
        "gc_content": 45.988,
        "coding_genes": 5946.667,
        "rRNA16S_genes": 12.0,
        "tRNA_genes": 102.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.9,
        "thermophilic_range_tmp": 0.033,
        "psychrophilic_range_tmp": 0.066,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paenibacillus",
        "xylanexedens"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}