{ "type": "genome", "identifier": "GCF_017874935.1", "organism": "Oceanobacillus polygoni", "title": "Oceanobacillus polygoni", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017874935.1", "bioproject": "PRJNA224116", "biosample": "SAMN18248232", "wgs_master": "JAGGMB000000000.1", "refseq_category": "na", "taxid": "1235259", "species_taxid": "1235259", "organism_name": "Oceanobacillus polygoni", "infraspecific_name": "strain=DSM 107338", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1787493v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_017874935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/874/935/GCF_017874935.1_ASM1787493v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4541091", "genome_size_ungapped": "4541091", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017874935.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4442", "protein_coding_gene_count": "4287", "non_coding_gene_count": "103", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Oceanobacillus polygoni" ], "sample_taxid": [ "1235259" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.289 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4541091", "Number of Sequences": "40", "Longest Sequences (bp)": "679562", "N50 (bp)": "234206", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.8", "Number of CDSs": "4403", "Average Protein Length": "290.5", "Coding Ratio (%)": "84.5", "Number of rRNAs": "1", "Number of tRNAs": "84", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanobacillus polygoni", "strain": "strain=SA9", "accession": "GCA_008304605.1", "taxid": 1235259, "species_taxid": 1235259, "relation_to_type": "type", "validated": true, "ani": 99.9899, "matched_fragments": 1471, "total_fragments": 1493, 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"organism_name": "Oceanobacillus rekensis", "strain": "strain=PT-11", "accession": "GCA_002153375.1", "taxid": 937927, "species_taxid": 937927, "relation_to_type": "type", "validated": true, "ani": 78.6794, "matched_fragments": 345, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus zhaokaii", "strain": "strain=160", "accession": "GCA_003352005.1", "taxid": 2052660, "species_taxid": 2052660, "relation_to_type": "type", "validated": true, "ani": 78.583, "matched_fragments": 223, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus damuensis", "strain": "strain=PT-20", "accession": "GCA_001618145.1", "taxid": 937928, "species_taxid": 937928, "relation_to_type": "type", "validated": true, "ani": 78.5099, "matched_fragments": 332, "total_fragments": 1493, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentibacillus amyloliquefaciens", "strain": 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