{ "type": "genome", "identifier": "GCF_017875555.1", "organism": "Amycolatopsis magusensis", "title": "Amycolatopsis magusensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017875555.1", "bioproject": "PRJNA224116", "biosample": "SAMN17674413", "wgs_master": "JAGGMS000000000.1", "refseq_category": "reference genome", "taxid": "882444", "species_taxid": "882444", "organism_name": "Amycolatopsis magusensis", "infraspecific_name": "strain=DSM 45510", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1787555v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_017875555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/875/555/GCF_017875555.1_ASM1787555v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9443615", "genome_size_ungapped": "9443615", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017875555.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "8578", "protein_coding_gene_count": "8441", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Amycolatopsis magusensis" ], "sample_taxid": [ "882444" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.518 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.39, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9443615", "Number of Sequences": "1", "Longest Sequences (bp)": "9443615", "N50 (bp)": "9443615", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "8686", "Average Protein Length": "332.8", "Coding Ratio (%)": "91.8", "Number of rRNAs": "11", "Number of tRNAs": "70", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amycolatopsis magusensis", "strain": "strain=DSM 45510", "accession": "GCA_017875555.1", "taxid": 882444, "species_taxid": 882444, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3146, "total_fragments": 3147, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amycolatopsis albispora", "strain": "strain=WP1", "accession": "GCA_003312875.1", "taxid": 1804986, "species_taxid": 1804986, "relation_to_type": "type", "validated": true, "ani": 88.9277, "matched_fragments": 2307, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis suaedae", "strain": "strain=8-3EHSu", "accession": "GCA_004214935.1", "taxid": 2510978, "species_taxid": 2510978, "relation_to_type": "type", "validated": true, "ani": 81.1761, "matched_fragments": 1470, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis anabasis", "strain": "strain=EGI 650086", "accession": "GCA_009765355.1", "taxid": 1840409, "species_taxid": 1840409, "relation_to_type": "type", "validated": true, "ani": 80.5557, "matched_fragments": 1513, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 80.3991, "matched_fragments": 1275, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=JCM 30562", "accession": "GCA_007713745.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 80.2973, "matched_fragments": 1189, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis saalfeldensis", "strain": "strain=DSM 44993", "accession": "GCA_900110575.1", "taxid": 394193, "species_taxid": 394193, "relation_to_type": "type", "validated": true, "ani": 80.2843, "matched_fragments": 1404, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis japonica", "strain": "strain=MG417-CF17", "accession": "GCA_000732925.1", "taxid": 208439, "species_taxid": 208439, "relation_to_type": "type", "validated": true, "ani": 80.2648, "matched_fragments": 1407, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis roodepoortensis", "strain": "strain=DSM 46661", "accession": "GCA_014873915.1", "taxid": 700274, "species_taxid": 700274, "relation_to_type": "type", "validated": true, "ani": 80.2616, "matched_fragments": 1395, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidiphila", "strain": "strain=KCTC 39523", "accession": "GCA_021391495.1", "taxid": 715473, "species_taxid": 715473, "relation_to_type": "type", "validated": true, "ani": 80.2581, "matched_fragments": 1231, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis vancoresmycina", "strain": "strain=DSM 44592", "accession": "GCA_000388135.1", "taxid": 208444, "species_taxid": 208444, "relation_to_type": "type", "validated": true, "ani": 80.1701, "matched_fragments": 1371, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis pretoriensis", "strain": "strain=DSM 44654", "accession": "GCA_900107925.1", "taxid": 218821, "species_taxid": 218821, "relation_to_type": "type", "validated": true, "ani": 80.1626, "matched_fragments": 1527, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thailandensis", "strain": "strain=JCM 16380", "accession": "GCA_002234405.1", "taxid": 589330, "species_taxid": 589330, "relation_to_type": "type", "validated": true, "ani": 80.1622, "matched_fragments": 1307, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 80.1533, "matched_fragments": 1588, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis regifaucium", "strain": "strain=GY080", "accession": "GCA_001558125.2", "taxid": 546365, "species_taxid": 546365, "relation_to_type": "type", "validated": true, "ani": 80.134, "matched_fragments": 1307, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis regifaucium", "strain": "strain=DSM 45072", "accession": "GCA_900113515.1", "taxid": 546365, "species_taxid": 546365, "relation_to_type": "type", "validated": true, "ani": 80.1291, "matched_fragments": 1320, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis regifaucium", "strain": "strain=GY080", "accession": "GCA_001613935.1", "taxid": 546365, "species_taxid": 546365, "relation_to_type": "type", "validated": true, "ani": 80.1245, "matched_fragments": 1305, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis tolypomycina", "strain": "strain=DSM 44544", "accession": "GCA_900105945.1", "taxid": 208445, "species_taxid": 208445, "relation_to_type": "type", "validated": true, "ani": 80.01, "matched_fragments": 1570, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis acidicola", "strain": "strain=K81G1", "accession": "GCA_007713735.2", "taxid": 2596893, "species_taxid": 2596893, "relation_to_type": "type", "validated": true, "ani": 79.8677, "matched_fragments": 1150, "total_fragments": 3147, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis aidingensis", "strain": "strain=YIM 96748", "accession": "GCA_018885265.1", "taxid": 2842453, "species_taxid": 2842453, "relation_to_type": 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