{ "type": "genome", "identifier": "GCF_017876115.1", "organism": "Azospirillum picis", "title": "Azospirillum picis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017876115.1", "bioproject": "PRJNA224116", "biosample": "SAMN18248203", "wgs_master": "JAGINO000000000.1", "refseq_category": "na", "taxid": "488438", "species_taxid": "488438", "organism_name": "Azospirillum picis", "infraspecific_name": "strain=IMMIB TAR-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1787611v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_017876115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/876/115/GCF_017876115.1_ASM1787611v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7015440", "genome_size_ungapped": "7015440", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "61", "contig_count": "61", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017876115.1-RS_2024_05_06", "annotation_date": "2024-05-06", "total_gene_count": "6322", "protein_coding_gene_count": "6181", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Azospirillum picis" ], "sample_taxid": [ "488438" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.905 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.71, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7015440", "Number of Sequences": "61", "Longest Sequences (bp)": "527224", "N50 (bp)": "189959", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.7", "Number of CDSs": "6315", "Average Protein Length": "325.0", "Coding Ratio (%)": "87.8", "Number of rRNAs": "1", "Number of tRNAs": "81", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Azospirillum picis", "strain": "strain=IMMIB TAR-3", "accession": "GCA_017876115.1", "taxid": 488438, "species_taxid": 488438, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2298, "total_fragments": 2305, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Azospirillum oryzae", "strain": "strain=COC8", "accession": "GCA_008364795.1", "taxid": 286727, "species_taxid": 286727, "relation_to_type": "type", "validated": true, "ani": 86.9894, "matched_fragments": 1498, "total_fragments": 2305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thiophilum", "strain": "strain=DSM 21654", "accession": "GCA_000960825.1", "taxid": 528244, "species_taxid": 528244, "relation_to_type": "type", "validated": true, "ani": 86.9322, "matched_fragments": 1604, "total_fragments": 2305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum thiophilum", "strain": "strain=BV-S", "accession": "GCA_001305595.1", "taxid": 528244, "species_taxid": 528244, "relation_to_type": "type", "validated": true, "ani": 86.9164, "matched_fragments": 1614, "total_fragments": 2305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum ramasamyi", "strain": "strain=M2T2B2", "accession": "GCA_003233655.1", "taxid": 682998, "species_taxid": 682998, "relation_to_type": "type", "validated": true, "ani": 86.8353, "matched_fragments": 1501, "total_fragments": 2305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum palustre", "strain": "strain=B2", "accession": "GCA_002573965.1", "taxid": 2044885, "species_taxid": 2044885, "relation_to_type": "type", "validated": true, "ani": 86.8102, "matched_fragments": 1636, "total_fragments": 2305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum lipoferum", "strain": "strain=59b", "accession": "GCA_008364955.1", "taxid": 193, "species_taxid": 193, "relation_to_type": "type", "validated": true, "ani": 86.7211, "matched_fragments": 1612, "total_fragments": 2305, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum melinis", "strain": "strain=TMCY 0552", "accession": "GCA_017876055.1", 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