{ "type": "genome", "identifier": "GCF_017876395.1", "organism": "Nesterenkonia lacusekhoensis", "title": "Nesterenkonia lacusekhoensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017876395.1", "bioproject": "PRJNA224116", "biosample": "SAMN17673211", "wgs_master": "JAGINX000000000.1", "refseq_category": "reference genome", "taxid": "150832", "species_taxid": "150832", "organism_name": "Nesterenkonia lacusekhoensis", "infraspecific_name": "strain=DSM 12544", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1787639v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_017876395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/876/395/GCF_017876395.1_ASM1787639v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2742649", "genome_size_ungapped": "2742649", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017876395.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "2641", "protein_coding_gene_count": "2526", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Nesterenkonia lacusekhoensis" ], "sample_taxid": [ "150832" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "0.750 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2742649", "Number of Sequences": "2", "Longest Sequences (bp)": "2694582", "N50 (bp)": "2694582", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.7", "Number of CDSs": "2653", "Average Protein Length": "315.2", "Coding Ratio (%)": "91.5", "Number of rRNAs": "6", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nesterenkonia lacusekhoensis", "strain": "strain=DSM 12544", "accession": "GCA_017876395.1", "taxid": 150832, "species_taxid": 150832, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 914, "total_fragments": 914, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nesterenkonia cremea", "strain": "strain=CGMCC 1.15388", "accession": "GCA_014642675.1", "taxid": 1882340, "species_taxid": 1882340, "relation_to_type": "type", "validated": true, "ani": 89.236, "matched_fragments": 751, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia jeotgali", "strain": "strain=DSM 19081", "accession": "GCA_014138825.1", "taxid": 317018, "species_taxid": 317018, "relation_to_type": "type", "validated": true, "ani": 80.3129, "matched_fragments": 436, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia halophila", "strain": "strain=DSM 16378", "accession": "GCA_009467795.1", "taxid": 302044, "species_taxid": 302044, "relation_to_type": "type", "validated": true, "ani": 80.2569, "matched_fragments": 347, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia sandarakina", "strain": "strain=DSM 15664", "accession": "GCA_013410215.1", "taxid": 272918, "species_taxid": 272918, "relation_to_type": "type", "validated": true, "ani": 80.162, "matched_fragments": 437, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia xinjiangensis", "strain": "strain=DSM 15475", "accession": "GCA_013410745.1", "taxid": 225327, "species_taxid": 225327, "relation_to_type": "type", "validated": true, "ani": 80.153, "matched_fragments": 469, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia aurantiaca", "strain": "strain=DSM 27373", "accession": "GCA_004364585.1", "taxid": 1436010, "species_taxid": 1436010, "relation_to_type": "type", "validated": true, "ani": 80.0329, "matched_fragments": 449, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia alkaliphila", "strain": "strain=F10", "accession": "GCA_009758175.1", "taxid": 1463631, "species_taxid": 1463631, "relation_to_type": "type", "validated": true, "ani": 79.9348, "matched_fragments": 364, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia alkaliphila", "strain": "strain=CGMCC 1.12781", "accession": "GCA_014639295.1", "taxid": 1463631, "species_taxid": 1463631, "relation_to_type": "type", "validated": true, "ani": 79.9236, "matched_fragments": 379, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia sedimenti", "strain": "strain=MY13", "accession": "GCA_012641515.1", "taxid": 1463632, "species_taxid": 1463632, "relation_to_type": "type", "validated": true, "ani": 79.7142, "matched_fragments": 362, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia halotolerans", "strain": "strain=DSM 15474", "accession": "GCA_014874065.1", "taxid": 225325, "species_taxid": 225325, "relation_to_type": "type", "validated": true, "ani": 79.6631, "matched_fragments": 405, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Garicola koreensis", "strain": "strain=DSM 28238", "accession": "GCA_014195445.1", "taxid": 1262554, "species_taxid": 1262554, "relation_to_type": "type", "validated": true, "ani": 79.1526, "matched_fragments": 297, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micrococcus luteus", "strain": "strain=ATCC 4698", "accession": "GCA_003417425.1", "taxid": 1270, "species_taxid": 1270, "relation_to_type": "type", "validated": true, "ani": 78.61, "matched_fragments": 190, "total_fragments": 914, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinomonas notoginsengisoli", "strain": "strain=KCTC 29237", "accession": "GCA_021554725.1", "taxid": 1457311, 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