{
    "type": "genome",
    "identifier": "GCF_017876405.1",
    "organism": "Kibdelosporangium banguiense",
    "title": "Kibdelosporangium banguiense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017876405.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17673457",
        "wgs_master": "JAGINW000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1365924",
        "species_taxid": "1365924",
        "organism_name": "Kibdelosporangium banguiense",
        "infraspecific_name": "strain=DSM 46670",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/08",
        "asm_name": "ASM1787640v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_017876405.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/876/405/GCF_017876405.1_ASM1787640v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "12808207",
        "genome_size_ungapped": "12808207",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017876405.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "11614",
        "protein_coding_gene_count": "11372",
        "non_coding_gene_count": "84",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-08",
    "dateModified": "2021-04-08",
    "datePublished": "2021-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kibdelosporangium banguiense"
        ],
        "sample_taxid": [
            "1365924"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "3.518 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 6.94,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "12808207",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "12808207",
        "N50 (bp)": "12808207",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.6",
        "Number of CDSs": "11564",
        "Average Protein Length": "337.0",
        "Coding Ratio (%)": "91.3",
        "Number of rRNAs": "9",
        "Number of tRNAs": "79",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Kibdelosporangium banguiense",
                "strain": "strain=DSM 46670",
                "accession": "GCA_017876405.1",
                "taxid": 1365924,
                "species_taxid": 1365924,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 4267,
                "total_fragments": 4269,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kibdelosporangium persicum",
                "strain": "strain=4NS15",
                "accession": "GCA_013280595.1",
                "taxid": 2698649,
                "species_taxid": 2698649,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6726,
                "matched_fragments": 1874,
                "total_fragments": 4269,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kibdelosporangium aridum",
                "strain": "strain=DSM 43828",
                "accession": "GCA_900176515.1",
                "taxid": 2030,
                "species_taxid": 2030,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4541,
                "matched_fragments": 2127,
                "total_fragments": 4269,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kibdelosporangium phytohabitans",
                "strain": "strain=KLBMP1111",
                "accession": "GCA_001302585.1",
                "taxid": 860235,
                "species_taxid": 860235,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9584,
                "matched_fragments": 1859,
                "total_fragments": 4269,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kibdelosporangium philippinense",
                "strain": "strain=ATCC 49844",
                "accession": "GCA_021390435.3",
                "taxid": 211113,
                "species_taxid": 211113,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9267,
                "matched_fragments": 1876,
                "total_fragments": 4269,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinokineospora globicatena",
                "strain": "strain=DSM 44256",
                "accession": "GCA_024171945.1",
                "taxid": 103729,
                "species_taxid": 103729,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3017,
                "matched_fragments": 839,
                "total_fragments": 4269,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lentzea aerocolonigenes",
                "strain": "strain=DSM 40034",
                "accession": "GCA_024171805.1",
                "taxid": 68170,
                "species_taxid": 68170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0957,
                "matched_fragments": 1023,
                "total_fragments": 4269,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amycolatopsis camponoti",
                "strain": "strain=A23",
                "accession": "GCA_902497555.1",
                "taxid": 2606593,
                "species_taxid": 2606593,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0166,
                "matched_fragments": 1125,
                "total_fragments": 4269,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinophytocola xinjiangensis",
                "strain": "strain=CGMCC 4.4663",
                "accession": "GCA_001921215.1",
                "taxid": 485602,
                "species_taxid": 485602,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9104,
                "matched_fragments": 997,
                "total_fragments": 4269,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prauserella cavernicola",
                "strain": "strain=ASG 168",
                "accession": "GCA_016595675.1",
                "taxid": 2800127,
                "species_taxid": 2800127,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8151,
                "matched_fragments": 757,
                "total_fragments": 4269,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 6.94,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017876405.1",
                "gtdb_species": "s__Kibdelosporangium banguiense",
                "ani": 100.0,
                "matched_fragments": 4267,
                "total_fragments": 4269,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Kibdelosporangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013280595.1",
                "gtdb_species": "s__Kibdelosporangium persicum",
                "ani": 82.6732,
                "matched_fragments": 1876,
                "total_fragments": 4269,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Kibdelosporangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000720375.1",
                "gtdb_species": "s__Kibdelosporangium sp000720375",
                "ani": 82.5432,
                "matched_fragments": 2140,
                "total_fragments": 4269,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Kibdelosporangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900176515.1",
                "gtdb_species": "s__Kibdelosporangium aridum",
                "ani": 82.4274,
                "matched_fragments": 2133,
                "total_fragments": 4269,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Kibdelosporangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000826545.1",
                "gtdb_species": "s__Kibdelosporangium sp000826545",
                "ani": 82.003,
                "matched_fragments": 1806,
                "total_fragments": 4269,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Kibdelosporangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001302585.1",
                "gtdb_species": "s__Kibdelosporangium phytohabitans",
                "ani": 81.9444,
                "matched_fragments": 1862,
                "total_fragments": 4269,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Kibdelosporangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001984155.1",
                "gtdb_species": "s__Kibdelosporangium sp001984155",
                "ani": 81.8998,
                "matched_fragments": 1837,
                "total_fragments": 4269,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Kibdelosporangium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 28.5,
        "optimum_ph": null,
        "genome_size": 12197320.0,
        "gc_content": 68.4,
        "coding_genes": 10238.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 73.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Kibdelosporangium",
        "banguiense"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}