{ "type": "genome", "identifier": "GCF_017876445.1", "organism": "Paenarthrobacter nicotinovorans", "title": "Paenarthrobacter nicotinovorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017876445.1", "bioproject": "PRJNA224116", "biosample": "SAMN17673411", "wgs_master": "JAGINZ000000000.1", "refseq_category": "na", "taxid": "29320", "species_taxid": "29320", "organism_name": "Paenarthrobacter nicotinovorans", "infraspecific_name": "strain=DSM 420", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1787644v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_017876445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/876/445/GCF_017876445.1_ASM1787644v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4491478", "genome_size_ungapped": "4491478", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017876445.1-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "4194", "protein_coding_gene_count": "4089", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenarthrobacter nicotinovorans" ], "sample_taxid": [ "29320" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": 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"organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_017353495.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 78.1024, "matched_fragments": 292, "total_fragments": 1497, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014648735.1", "gtdb_species": "s__Paenarthrobacter nicotinovorans", "ani": 99.9813, "matched_fragments": 1467, "total_fragments": 1497, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Paenarthrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.78", "min_intra_species_ani": "98.50", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_014647595.1", "gtdb_species": 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paenarthrobacter", "nicotinovorans" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }