{ "type": "genome", "identifier": "GCF_017876535.1", "organism": "Paeniglutamicibacter kerguelensis", "title": "Paeniglutamicibacter kerguelensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017876535.1", "bioproject": "PRJNA224116", "biosample": "SAMN17673119", "wgs_master": "JAGIOF000000000.1", "refseq_category": "reference genome", "taxid": "254788", "species_taxid": "254788", "organism_name": "Paeniglutamicibacter kerguelensis", "infraspecific_name": "strain=DSM 15797", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1787653v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_017876535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/876/535/GCF_017876535.1_ASM1787653v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4807802", "genome_size_ungapped": "4807802", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017876535.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "4346", "protein_coding_gene_count": "4229", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Paeniglutamicibacter kerguelensis" ], "sample_taxid": [ "254788" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.336 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4807802", "Number of Sequences": "5", "Longest Sequences (bp)": "4182687", "N50 (bp)": "4182687", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.2", "Number of CDSs": "4367", "Average Protein Length": "314.0", "Coding Ratio (%)": "85.6", "Number of rRNAs": "11", "Number of tRNAs": "66", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paeniglutamicibacter kerguelensis", "strain": "strain=DSM 15797", "accession": "GCA_017876535.1", "taxid": 254788, 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"validated": true, "ani": 79.6302, "matched_fragments": 360, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhihengliuella salsuginis", "strain": "strain=KCTC 19466", "accession": "GCA_014651715.1", "taxid": 578222, "species_taxid": 578222, "relation_to_type": "type", "validated": true, "ani": 79.0887, "matched_fragments": 393, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 78.8923, "matched_fragments": 380, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter stackebrandtii", "strain": "strain=DSM 16005", "accession": "GCA_017876675.1", "taxid": 272161, "species_taxid": 272161, "relation_to_type": "type", "validated": true, "ani": 78.8871, "matched_fragments": 386, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_018866305.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 78.4171, "matched_fragments": 270, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sunyaminii", "strain": "strain=zg-ZUI122", "accession": "GCA_017353495.1", "taxid": 2816859, "species_taxid": 2816859, "relation_to_type": "type", "validated": true, "ani": 78.2812, "matched_fragments": 271, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter citreus", "strain": "strain=DSM 20133", "accession": "GCA_009192745.1", "taxid": 1670, "species_taxid": 1670, "relation_to_type": "type", "validated": true, "ani": 78.1377, "matched_fragments": 318, "total_fragments": 1600, 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"thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paeniglutamicibacter", "kerguelensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }