{
    "type": "genome",
    "identifier": "GCF_017876595.1",
    "organism": "Aeromicrobium fastidiosum",
    "title": "Aeromicrobium fastidiosum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017876595.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17673392",
        "wgs_master": "JAGIOG000000000.1",
        "refseq_category": "reference genome",
        "taxid": "52699",
        "species_taxid": "52699",
        "organism_name": "Aeromicrobium fastidiosum",
        "infraspecific_name": "strain=DSM 10552",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/08",
        "asm_name": "ASM1787659v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_017876595.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/876/595/GCF_017876595.1_ASM1787659v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3925785",
        "genome_size_ungapped": "3925785",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017876595.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "3915",
        "protein_coding_gene_count": "3848",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-08",
    "dateModified": "2021-04-08",
    "datePublished": "2021-04-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aeromicrobium fastidiosum"
        ],
        "sample_taxid": [
            "52699"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.046 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3925785",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3925785",
        "N50 (bp)": "3925785",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.8",
        "Number of CDSs": "3886",
        "Average Protein Length": "313.7",
        "Coding Ratio (%)": "93.2",
        "Number of rRNAs": "6",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aeromicrobium fastidiosum",
                "strain": "strain=DSM 10552",
                "accession": "GCA_017876595.1",
                "taxid": 52699,
                "species_taxid": 52699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1308,
                "total_fragments": 1308,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aeromicrobium endophyticum",
                "strain": "strain=M2KJ-4",
                "accession": "GCA_003586285.1",
                "taxid": 2292704,
                "species_taxid": 2292704,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.414,
                "matched_fragments": 969,
                "total_fragments": 1308,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromicrobium stalagmiti",
                "strain": "strain=YC3-14",
                "accession": "GCA_013283745.1",
                "taxid": 2738988,
                "species_taxid": 2738988,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9155,
                "matched_fragments": 884,
                "total_fragments": 1308,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromicrobium chenweiae",
                "strain": "strain=592",
                "accession": "GCA_003065605.1",
                "taxid": 2079793,
                "species_taxid": 2079793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2086,
                "matched_fragments": 814,
                "total_fragments": 1308,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromicrobium yanjiei",
                "strain": "strain=MF47",
                "accession": "GCA_009649075.1",
                "taxid": 2662028,
                "species_taxid": 2662028,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0104,
                "matched_fragments": 774,
                "total_fragments": 1308,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aeromicrobium phoceense",
                "strain": "strain=Marseille-Q0843",
                "accession": "GCA_013868155.1",
                "taxid": 2754045,
                "species_taxid": 2754045,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.347,
                "matched_fragments": 529,
                "total_fragments": 1308,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides hwasunensis",
                "strain": "strain=19197",
                "accession": "GCA_014779665.1",
                "taxid": 397258,
                "species_taxid": 397258,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2399,
                "matched_fragments": 438,
                "total_fragments": 1308,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides donggukensis",
                "strain": "strain=MJB4",
                "accession": "GCA_014842875.1",
                "taxid": 2774019,
                "species_taxid": 2774019,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0549,
                "matched_fragments": 377,
                "total_fragments": 1308,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides humilatus",
                "strain": "strain=BN130099",
                "accession": "GCA_008373755.1",
                "taxid": 2607660,
                "species_taxid": 2607660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9665,
                "matched_fragments": 412,
                "total_fragments": 1308,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides carbamazepini",
                "strain": "strain=CBZ_1",
                "accession": "GCA_024614185.1",
                "taxid": 2854259,
                "species_taxid": 2854259,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8284,
                "matched_fragments": 465,
                "total_fragments": 1308,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017876595.1",
                "gtdb_species": "s__Aeromicrobium fastidiosum",
                "ani": 100.0,
                "matched_fragments": 1307,
                "total_fragments": 1308,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001426485.1",
                "gtdb_species": "s__Aeromicrobium sp001426485",
                "ani": 87.4164,
                "matched_fragments": 974,
                "total_fragments": 1308,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003586285.1",
                "gtdb_species": "s__Aeromicrobium endophyticum",
                "ani": 87.4084,
                "matched_fragments": 970,
                "total_fragments": 1308,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013283745.1",
                "gtdb_species": "s__Aeromicrobium sp013283745",
                "ani": 84.9062,
                "matched_fragments": 885,
                "total_fragments": 1308,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003065605.1",
                "gtdb_species": "s__Aeromicrobium chenweiae",
                "ani": 84.2109,
                "matched_fragments": 814,
                "total_fragments": 1308,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009649075.1",
                "gtdb_species": "s__Aeromicrobium yanjiei",
                "ani": 84.0412,
                "matched_fragments": 774,
                "total_fragments": 1308,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_902506105.1",
                "gtdb_species": "s__Aeromicrobium sp902506105",
                "ani": 82.9553,
                "matched_fragments": 784,
                "total_fragments": 1308,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Aeromicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": 27.5,
        "optimum_tmp": 27.214,
        "optimum_ph": 6.885,
        "genome_size": 3380525.777,
        "gc_content": 71.442,
        "coding_genes": 3236.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 47.0,
        "gram_stain": 1.0,
        "sporulation": 0.2,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.142,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.857,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.714,
        "coccus_cell_shape": 0.285,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Aeromicrobium",
        "fastidiosum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}