{ "type": "genome", "identifier": "GCF_017876615.1", "organism": "Glutamicibacter protophormiae", "title": "Glutamicibacter protophormiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017876615.1", "bioproject": "PRJNA224116", "biosample": "SAMN17673561", "wgs_master": "JAGIOJ000000000.1", "refseq_category": "na", "taxid": "37930", "species_taxid": "37930", "organism_name": "Glutamicibacter protophormiae", "infraspecific_name": "strain=DSM 20168", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1787661v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_017876615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/876/615/GCF_017876615.1_ASM1787661v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3872967", "genome_size_ungapped": "3872967", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017876615.1-RS_2024_09_13", "annotation_date": "2024-09-13", "total_gene_count": "3640", "protein_coding_gene_count": "3516", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Glutamicibacter protophormiae" ], "sample_taxid": [ "37930" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": 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"status": "below_threshold" }, { "organism_name": "Glutamicibacter mysorens", "strain": "strain=DSM 12798", "accession": "GCA_002797775.1", "taxid": 257984, "species_taxid": 257984, "relation_to_type": "type", "validated": true, "ani": 82.9524, "matched_fragments": 752, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter nicotianae", "strain": "strain=NBRC 14234", "accession": "GCA_006539525.1", "taxid": 37929, "species_taxid": 37929, "relation_to_type": "type", "validated": true, "ani": 82.8263, "matched_fragments": 718, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glutamicibacter halophytocola", "strain": "strain=KLBMP 5180", "accession": "GCA_001302565.1", "taxid": 1933880, "species_taxid": 1933880, "relation_to_type": "type", "validated": true, "ani": 81.7538, "matched_fragments": 604, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.3845, "matched_fragments": 305, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.1783, "matched_fragments": 299, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia yuyongxinii", "strain": "strain=Z443", "accession": "GCA_006352065.1", "taxid": 2589797, "species_taxid": 2589797, "relation_to_type": "type", "validated": true, "ani": 77.0737, "matched_fragments": 175, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium flaccumfaciens", "strain": "strain=LMG3645", "accession": "GCA_024997845.1", "taxid": 2035, "species_taxid": 2035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8504, "matched_fragments": 139, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanitalea stevensii", "strain": "strain=Sa1BUA1", "accession": "GCA_014837105.1", "taxid": 2763072, "species_taxid": 2763072, "relation_to_type": "type", "validated": true, "ani": 76.8357, "matched_fragments": 148, "total_fragments": 1290, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014647495.1", "gtdb_species": "s__Glutamicibacter protophormiae", "ani": 99.9717, "matched_fragments": 1259, "total_fragments": 1290, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Glutamicibacter", 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"quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }