{ "type": "genome", "identifier": "GCF_017883985.1", "organism": "Streptococcus oricebi", "title": "Streptococcus oricebi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "TAILORED-Treatment project", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017883985.1", "bioproject": "PRJNA224116", "biosample": "SAMN08474742", "wgs_master": "PRDG00000000.1", "refseq_category": "reference genome", "taxid": "1547447", "species_taxid": "1547447", "organism_name": "Streptococcus oricebi", "infraspecific_name": "strain=CCUG 70868", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/08", "asm_name": "ASM1788398v1", "asm_submitter": "TAILORED-Treatment project", "gbrs_paired_asm": "GCA_017883985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/883/985/GCF_017883985.1_ASM1788398v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2141351", "genome_size_ungapped": "2141156", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017883985.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2101", "protein_coding_gene_count": "2022", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-08", "dateModified": "2021-04-08", "datePublished": "2021-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus oricebi" ], "sample_taxid": [ "1547447" ], "sample_host_organism": [ "Sapajus apella" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Nasu World Monkey Park, Tochigi" ], "sample_host_location_id": [], "data_size": "0.605 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2141351", "Number of Sequences": "14", "Longest Sequences (bp)": "558658", "N50 (bp)": "350222", "Gap Ratio (%)": "0.010928", "GCcontent (%)": "44.4", "Number of CDSs": "2043", "Average Protein Length": "307.4", "Coding Ratio (%)": "88.0", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus massiliensis", "strain": "strain=4401825", "accession": "GCA_000341525.1", "taxid": 313439, "species_taxid": 313439, "relation_to_type": "type", "validated": true, "ani": 80.2681, 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}, { "organism_name": "Streptococcus gordonii", "strain": "strain=CCUG 33482", "accession": "GCA_001553855.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4709, "matched_fragments": 157, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gordonii", "strain": "strain=ATCC 10558", "accession": "GCA_001469295.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4379, "matched_fragments": 157, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 78.4155, "matched_fragments": 116, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_000222765.2", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 78.4118, "matched_fragments": 170, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC7863", "accession": "GCA_900475505.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3922, "matched_fragments": 184, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=SK1", "accession": "GCA_000194945.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3736, "matched_fragments": 182, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC 7863", 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"taxid": 1888195, "species_taxid": 1888195, "relation_to_type": "type", "validated": true, "ani": 78.1455, "matched_fragments": 139, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus himalayensis", "strain": "strain=CGMCC 1.15533", "accession": "GCA_014643475.1", "taxid": 1888195, "species_taxid": 1888195, "relation_to_type": "type", "validated": true, "ani": 77.999, "matched_fragments": 137, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sobrinus", "strain": "strain=SL1", "accession": "GCA_003172995.1", "taxid": 1310, "species_taxid": 1310, "relation_to_type": "type", "validated": true, "ani": 77.7719, "matched_fragments": 80, "total_fragments": 708, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus merionis", "strain": "strain=DSM 19192", "accession": "GCA_000380085.1", "taxid": 400065, "species_taxid": 400065, 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