{ "type": "genome", "identifier": "GCF_017897605.1", "organism": "Dickeya parazeae", "title": "Dickeya parazeae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sorbonne University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017897605.1", "bioproject": "PRJNA224116", "biosample": "SAMN18138583", "wgs_master": "JAGJWU000000000.1", "refseq_category": "na", "taxid": "2893572", "species_taxid": "2893572", "organism_name": "Dickeya parazeae", "infraspecific_name": "strain=S31", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/10", "asm_name": "ASM1789760v1", "asm_submitter": "Sorbonne University", "gbrs_paired_asm": "GCA_017897605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/897/605/GCF_017897605.1_ASM1789760v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4711277", "genome_size_ungapped": "4711277", "gc_percent": "53.500000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-30", "total_gene_count": "4193", "protein_coding_gene_count": "4062", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-10", "dateModified": "2021-04-10", "datePublished": "2021-04-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Dickeya parazeae" ], "sample_taxid": [ "2893572" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: lac Boufflers" ], "sample_host_location_id": [], "data_size": "1.338 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4711277", "Number of Sequences": "54", "Longest Sequences (bp)": "862725", "N50 (bp)": "321909", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.7", "Number of CDSs": "4082", "Average Protein Length": "327.1", "Coding Ratio (%)": "85.0", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dickeya parazeae", "strain": "strain=S31", "accession": "GCA_017897605.1", "taxid": 2893572, "species_taxid": 2893572, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1550, "total_fragments": 1552, "ani_threshold": 95, "status": 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1778540, "species_taxid": 1778540, "relation_to_type": "type", "validated": true, "ani": 85.5309, "matched_fragments": 1264, "total_fragments": 1552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya dadantii subsp. dieffenbachiae", "strain": "strain=NCPPB 2976", "accession": "GCA_000406185.1", "taxid": 204040, "species_taxid": 204038, "relation_to_type": "type", "validated": true, "ani": 85.4979, "matched_fragments": 1238, "total_fragments": 1552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya solani", "strain": "strain=IPO 2222", "accession": "GCA_001644705.1", "taxid": 1089444, "species_taxid": 1089444, "relation_to_type": "type", "validated": true, "ani": 85.359, "matched_fragments": 1270, "total_fragments": 1552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya solani", "strain": "strain=IPO 2222", "accession": "GCA_000400795.1", "taxid": 1089444, "species_taxid": 1089444, "relation_to_type": "type", "validated": true, "ani": 85.346, "matched_fragments": 1254, "total_fragments": 1552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Musicola keenii", "strain": "strain=A3967", "accession": "GCA_022761095.1", "taxid": 2884250, "species_taxid": 2884250, "relation_to_type": "type", "validated": true, "ani": 80.5166, "matched_fragments": 758, "total_fragments": 1552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia entomophila", "strain": "strain=A1", "accession": "GCA_021462285.1", "taxid": 42906, "species_taxid": 42906, "relation_to_type": "type", "validated": true, "ani": 78.6295, "matched_fragments": 427, "total_fragments": 1552, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 78.4077, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Dickeya", "parazeae" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }