{
    "type": "genome",
    "identifier": "GCF_017901135.1",
    "organism": "Thiothrix litoralis",
    "title": "Thiothrix litoralis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Bioengineering, Research Center of Biotechnology of RAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017901135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18614031",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2891210",
        "species_taxid": "2891210",
        "organism_name": "Thiothrix litoralis",
        "infraspecific_name": "strain=AS",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/12",
        "asm_name": "ASM1790113v1",
        "asm_submitter": "Institute of Bioengineering, Research Center of Biotechnology of RAS",
        "gbrs_paired_asm": "GCA_017901135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/901/135/GCF_017901135.1_ASM1790113v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4284843",
        "genome_size_ungapped": "4284843",
        "gc_percent": "53.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017901135.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "4207",
        "protein_coding_gene_count": "4099",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-12",
    "dateModified": "2021-04-12",
    "datePublished": "2021-04-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thiothrix lacustris"
        ],
        "sample_taxid": [
            "525917"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia: White Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.204 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4284843",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4284843",
        "N50 (bp)": "4284843",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.8",
        "Number of CDSs": "4172",
        "Average Protein Length": "315.2",
        "Coding Ratio (%)": "92.1",
        "Number of rRNAs": "9",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "8"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Thiothrix litoralis",
                "strain": "strain=AS",
                "accession": "GCA_017901135.1",
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                "species_taxid": 2891210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1428,
                "total_fragments": 1428,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
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                "accession": "GCA_000621325.1",
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                "species_taxid": 525917,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.7677,
                "matched_fragments": 968,
                "total_fragments": 1428,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiothrix fructosivorans",
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                "accession": "GCA_017349355.1",
                "taxid": 111770,
                "species_taxid": 111770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2251,
                "matched_fragments": 814,
                "total_fragments": 1428,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiothrix subterranea",
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                "accession": "GCA_016772315.1",
                "taxid": 2735563,
                "species_taxid": 2735563,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1848,
                "matched_fragments": 801,
                "total_fragments": 1428,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiothrix winogradskyi",
                "strain": "strain=CT3",
                "accession": "GCA_021650935.1",
                "taxid": 96472,
                "species_taxid": 96472,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6554,
                "matched_fragments": 816,
                "total_fragments": 1428,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiothrix caldifontis",
                "strain": "strain=DSM 21228",
                "accession": "GCA_900107695.1",
                "taxid": 525918,
                "species_taxid": 525918,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5537,
                "matched_fragments": 736,
                "total_fragments": 1428,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiothrix unzii",
                "strain": "strain=A1",
                "accession": "GCA_017901175.1",
                "taxid": 111769,
                "species_taxid": 111769,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.993,
                "matched_fragments": 527,
                "total_fragments": 1428,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_017901135.1",
                "gtdb_species": "s__Thiothrix sp017901135",
                "ani": 100.0,
                "matched_fragments": 1428,
                "total_fragments": 1428,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000621325.1",
                "gtdb_species": "s__Thiothrix lacustris",
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                "matched_fragments": 968,
                "total_fragments": 1428,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017349355.1",
                "gtdb_species": "s__Thiothrix fructosivorans",
                "ani": 82.2232,
                "matched_fragments": 814,
                "total_fragments": 1428,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016772315.1",
                "gtdb_species": "s__Thiothrix sp016772315",
                "ani": 82.1818,
                "matched_fragments": 797,
                "total_fragments": 1428,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900107695.1",
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                "total_fragments": 1428,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017901175.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017901155.1",
                "gtdb_species": "s__Thiothrix sp017901155",
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                "matched_fragments": 469,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
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                "status": "-"
            },
            {
                "accession": "GCA_018822845.1",
                "gtdb_species": "s__Thiothrix sp018822845",
                "ani": 80.1466,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
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                "mean_intra_species_ani": "99.95",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_002425225.1",
                "gtdb_species": "s__Thiothrix moscowensis",
                "ani": 79.8111,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Thiothrix",
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                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.041,
        "cell_length": 0.35,
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        "gram_stain": 0.0,
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        "motility": 0.333,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.833,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "litoralis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}