{ "type": "genome", "identifier": "GCF_017948675.1", "organism": "Flavobacterium flabelliforme", "title": "Flavobacterium flabelliforme", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Masaryk University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_017948675.1", "bioproject": "PRJNA224116", "biosample": "SAMN18262075", "wgs_master": "JAGFBU000000000.1", "refseq_category": "reference genome", "taxid": "2816119", "species_taxid": "2816119", "organism_name": "Flavobacterium flabelliforme", "infraspecific_name": "strain=P4023", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/14", "asm_name": "ASM1794867v1", "asm_submitter": "Masaryk University", "gbrs_paired_asm": "GCA_017948675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/948/675/GCF_017948675.1_ASM1794867v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3631245", "genome_size_ungapped": "3631148", "gc_percent": "32.000000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_017948675.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3183", "protein_coding_gene_count": "3104", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-14", "dateModified": "2021-04-14", "datePublished": "2021-04-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium flabelliforme" ], "sample_taxid": [ "2816119" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "1.007 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3631245", "Number of Sequences": "57", "Longest Sequences (bp)": "1422010", "N50 (bp)": "542938", "Gap Ratio (%)": "0.002892", "GCcontent (%)": "31.9", "Number of CDSs": "3086", "Average Protein Length": "338.7", "Coding Ratio (%)": "86.4", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium flabelliforme", "strain": "strain=P4023", "accession": "GCA_017948675.1", "taxid": 2816119, "species_taxid": 2816119, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1192, "total_fragments": 1195, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium weaverense", "strain": "strain=DSM 19727", "accession": "GCA_003688495.1", "taxid": 271156, "species_taxid": 271156, "relation_to_type": "type", "validated": true, "ani": 82.5901, "matched_fragments": 743, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fryxellicola", "strain": "strain=DSM 16209", "accession": "GCA_001637185.1", "taxid": 249352, "species_taxid": 249352, "relation_to_type": "type", "validated": true, "ani": 80.8412, "matched_fragments": 625, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium segetis", "strain": "strain=DSM 19741", "accession": "GCA_900129575.1", "taxid": 271157, "species_taxid": 271157, "relation_to_type": "type", "validated": true, "ani": 80.679, "matched_fragments": 639, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 80.6245, "matched_fragments": 625, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sandaracinum", "strain": "strain=LB-D12", "accession": "GCA_004349135.1", "taxid": 2541733, "species_taxid": 2541733, "relation_to_type": "type", "validated": true, "ani": 80.5924, "matched_fragments": 627, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 80.5817, "matched_fragments": 618, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium petrolei", "strain": "strain=Kopri-42", "accession": "GCA_003314435.2", "taxid": 2259594, "species_taxid": 2259594, "relation_to_type": "type", "validated": true, "ani": 80.4202, "matched_fragments": 622, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium urumqiense", "strain": "strain=CGMCC 1.9230", "accession": "GCA_900108015.1", "taxid": 935224, "species_taxid": 935224, "relation_to_type": "type", "validated": true, "ani": 80.1017, "matched_fragments": 543, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 80.0896, "matched_fragments": 539, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xinjiangense", "strain": "strain=CGMCC 1.2749", "accession": "GCA_900142885.1", "taxid": 178356, "species_taxid": 178356, "relation_to_type": "type", "validated": true, "ani": 80.0249, "matched_fragments": 559, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hiemivividum", "strain": "strain=TSA-D2", "accession": "GCA_004349145.1", "taxid": 2541734, "species_taxid": 2541734, "relation_to_type": "type", "validated": true, "ani": 79.5121, "matched_fragments": 493, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium degerlachei", "strain": "strain=DSM 15718", "accession": "GCA_900106645.1", "taxid": 229203, "species_taxid": 229203, "relation_to_type": "type", "validated": true, "ani": 79.3493, "matched_fragments": 436, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium taihuense", "strain": "strain=NAS39", "accession": "GCA_019351435.1", "taxid": 2857508, "species_taxid": 2857508, "relation_to_type": "type", "validated": true, "ani": 78.8549, "matched_fragments": 416, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychroterrae", "strain": "strain=CCM 8827", "accession": "GCA_018380615.1", "taxid": 2133767, "species_taxid": 2133767, "relation_to_type": "type", "validated": true, "ani": 78.7168, "matched_fragments": 423, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 78.5927, "matched_fragments": 368, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 78.5687, "matched_fragments": 345, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 78.3682, "matched_fragments": 389, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium luteum", "strain": "strain=NBRC 112527", "accession": "GCA_008806775.1", "taxid": 2026654, "species_taxid": 2026654, "relation_to_type": "type", "validated": true, "ani": 78.3173, "matched_fragments": 307, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium litorale", "strain": "strain=WSW3-B6", "accession": "GCA_019613795.1", "taxid": 2856519, "species_taxid": 2856519, "relation_to_type": "type", "validated": true, "ani": 77.2012, "matched_fragments": 75, "total_fragments": 1195, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014281985.1", "gtdb_species": "s__Flavobacterium sp014281985", "ani": 98.0482, "matched_fragments": 1070, "total_fragments": 1195, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003688495.1", "gtdb_species": "s__Flavobacterium weaverense", "ani": 82.5903, "matched_fragments": 743, "total_fragments": 1195, "gtdb_taxonomy": 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