{
    "type": "genome",
    "identifier": "GCF_017979375.1",
    "organism": "Helicobacter suis",
    "title": "Helicobacter suis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "King's College London",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_017979375.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN17297349",
        "wgs_master": "JAERIR000000000.1",
        "refseq_category": "na",
        "taxid": "104628",
        "species_taxid": "104628",
        "organism_name": "Helicobacter suis",
        "infraspecific_name": "strain=DSM 19735",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/15",
        "asm_name": "ASM1797937v1",
        "asm_submitter": "King's College London",
        "gbrs_paired_asm": "GCA_017979375.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/017/979/375/GCF_017979375.1_ASM1797937v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1632289",
        "genome_size_ungapped": "1632289",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "113",
        "contig_count": "113",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_017979375.1-RS_2024_05_11",
        "annotation_date": "2024-05-11",
        "total_gene_count": "1726",
        "protein_coding_gene_count": "1616",
        "non_coding_gene_count": "47",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-15",
    "dateModified": "2021-04-15",
    "datePublished": "2021-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Helicobacter suis"
        ],
        "sample_taxid": [
            "104628"
        ],
        "sample_host_organism": [
            "Sus scrofa domesticus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "gastrointestinal"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Belgium"
        ],
        "sample_host_location_id": [],
        "data_size": "0.461 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1632289",
        "Number of Sequences": "113",
        "Longest Sequences (bp)": "119371",
        "N50 (bp)": "31398",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.9",
        "Number of CDSs": "1599",
        "Average Protein Length": "298.3",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Helicobacter suis",
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                "accession": "GCA_017979375.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 489,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Helicobacter suis",
                "strain": "strain=HS1",
                "accession": "GCA_000187625.2",
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                "species_taxid": 104628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9437,
                "matched_fragments": 483,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Helicobacter ailurogastricus",
                "strain": "",
                "accession": "GCA_001282945.1",
                "taxid": 1578720,
                "species_taxid": 1578720,
                "relation_to_type": "type",
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                "ani": 77.6938,
                "matched_fragments": 122,
                "total_fragments": 493,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter mehlei",
                "strain": "strain=L15",
                "accession": "GCA_003660265.1",
                "taxid": 2316080,
                "species_taxid": 2316080,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4874,
                "matched_fragments": 147,
                "total_fragments": 493,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter heilmannii",
                "strain": "",
                "accession": "GCA_001283065.1",
                "taxid": 35817,
                "species_taxid": 35817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1369,
                "matched_fragments": 111,
                "total_fragments": 493,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter heilmannii",
                "strain": "strain=LMG 26292",
                "accession": "GCA_017979395.1",
                "taxid": 35817,
                "species_taxid": 35817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.078,
                "matched_fragments": 108,
                "total_fragments": 493,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter salomonis",
                "strain": "strain=CIP 105607",
                "accession": "GCA_017979425.1",
                "taxid": 56878,
                "species_taxid": 56878,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0363,
                "matched_fragments": 94,
                "total_fragments": 493,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Helicobacter pylori",
                "strain": "strain=CCUG 17874",
                "accession": "GCA_000258845.1",
                "taxid": 210,
                "species_taxid": 210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3489,
                "matched_fragments": 54,
                "total_fragments": 493,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000187625.1",
                "gtdb_species": "s__Helicobacter_E suis",
                "ani": 99.9437,
                "matched_fragments": 483,
                "total_fragments": 493,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 27,
                "status": "conclusive"
            },
            {
                "accession": "GCF_902196135.1",
                "gtdb_species": "s__Helicobacter_E suis_A",
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                "matched_fragments": 443,
                "total_fragments": 493,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.68",
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                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_902196125.1",
                "gtdb_species": "s__Helicobacter_E suis_B",
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                "matched_fragments": 445,
                "total_fragments": 493,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.42",
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                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000259255.1",
                "gtdb_species": "s__Helicobacter cetorum_B",
                "ani": 78.6495,
                "matched_fragments": 61,
                "total_fragments": 493,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Helicobacteraceae;g__Helicobacter",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001282945.1",
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            },
            {
                "accession": "GCF_003660265.1",
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            },
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                "mean_intra_species_ani": "N/A",
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            },
            {
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}